RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TGIF2Q9GZN2 237 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 CRYM-AS1A6NIL9 109 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 IGHV2-70P01814 119 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 DANCRP0C864 163 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 LYL1P12980 280 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 CCNOP22674 350 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 TAGLN2P37802 199 aaKnown RBP10.73□□□□□ -0.69
LDLR-205ENST00000557933 EIF2S3P41091 472 aaKnown RBP10.73□□□□□ -0.69
LDLR-205ENST00000557933 GUCA1AP43080 201 aaPredicted RBP10.73□□□□□ -0.69
LDLR-205ENST00000557933 ERVFRD-1P60508 538 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 WDSUB1Q8N9V3 476 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 TSTD1Q8NFU3 115 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 SCGB3A2Q96PL1 93 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 ALKBH3Q96Q83 286 aaPredicted RBP10.73□□□□□ -0.69
LDLR-205ENST00000557933 HS3ST3B1Q9Y662 390 aa10.73□□□□□ -0.69
LDLR-205ENST00000557933 OR7C1O76099 320 aaPredicted RBP10.72□□□□□ -0.69
LDLR-205ENST00000557933 EIF5AP63241 154 aaKnown RBP10.72□□□□□ -0.69
LDLR-205ENST00000557933 RAET1LQ5VY80 246 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 Q6ZPA2 131 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 SPEM1Q8N4L4 309 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 TMEM171Q8WVE6 324 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 TCTEX1D2Q8WW35 142 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 S100PBPQ96BU1 408 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 RAB39BQ96DA2 213 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 OR51M1Q9H341 326 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 SMOC1Q9H4F8 434 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 DOK5Q9P104 306 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 IL36RNQ9UBH0 155 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 NSG1A0A0A6YYJ2 146 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 M0R135 149 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 CYB5BO43169 146 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 IGHV2-5P01817 119 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 HLA-HP01893 362 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 S100A8P05109 93 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 CCL2P13500 99 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 S100A12P80511 92 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 ZNF774Q6NX45 483 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 OPN5Q6U736 354 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 Q8WTZ3 238 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 ZNF799Q96GE5 643 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 OR6C1Q96RD1 312 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 TOLLIPQ9H0E2 274 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 SLC35B3Q9H1N7 401 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 CA14Q9ULX7 337 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 PI4KAP42356 2102 aa10.72□□□□□ -0.69
LDLR-205ENST00000557933 IGKV1-12A0A0C4DH73 117 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 BLACEA4D250 179 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 H3BQ15 152 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 HMGB3O15347 200 aaKnown RBP10.71□□□□□ -0.69
LDLR-205ENST00000557933 PPIHO43447 177 aaKnown RBP10.71□□□□□ -0.69
LDLR-205ENST00000557933 IGKV1D-12P01611 117 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 TRGC2P03986 189 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 LCATP04180 440 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 MMP9P14780 707 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 B4GALT1P15291 398 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ATP6V0CP27449 155 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 FGF8P55075 233 aaPredicted RBP10.71□□□□□ -0.69
LDLR-205ENST00000557933 TSC22D1Q15714 1073 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 CCDC54Q8NEL0 328 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ST8SIA1Q92185 356 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 HS3ST6Q96QI5 342 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 TMPRSS5Q9H3S3 457 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ZNF442Q9H7R0 627 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 LMAN1LQ9HAT1 526 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 SEBOXQ9HB31 216 aaPredicted RBP10.71□□□□□ -0.69
LDLR-205ENST00000557933 TRAV39A0A0B4J263 110 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 IGSF23A1L1A6 192 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ZNF724A8MTY0 619 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 TAAR5O14804 337 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 SCGNO76038 276 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 AADACP22760 399 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 RAB2AP61019 212 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 UBE2KP61086 200 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 TMEM187Q14656 261 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ZNF600Q6ZNG1 722 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 ANKRD37Q7Z713 158 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 LRP11Q86VZ4 500 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 UBAC2Q8NBM4 344 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 CADM4Q8NFZ8 388 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 OR10AD1Q8NGE0 317 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 MEGF10Q96KG7 1140 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 METTL1Q9UBP6 276 aaKnown RBP10.71□□□□□ -0.69
LDLR-205ENST00000557933 KCNIP3Q9Y2W7 256 aa10.71□□□□□ -0.69
LDLR-205ENST00000557933 BORCS7-ASMTA0A0B4J1R7 106 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 A0A1B0GV90 55 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 ZFP92A6NM28 416 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 NUDT19A8MXV4 375 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 TERTO14746 1132 aaKnown RBP10.71□□□□□ -0.7
LDLR-205ENST00000557933 NPBWR2P48146 333 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 RND3P61587 244 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 EWSR1Q01844 656 aaKnown RBP eCLIP10.71□□□□□ -0.76e-6■■■■□ 22.1
LDLR-205ENST00000557933 ZNF154Q13106 437 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 PPA1Q15181 289 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 SLC23A3Q6PIS1 610 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 SLC25A47Q6Q0C1 308 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 OR5C1Q8NGR4 320 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 OR1J1Q8NGS3 322 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 SUCNR1Q9BXA5 334 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 NAA60Q9H7X0 242 aa10.71□□□□□ -0.7
LDLR-205ENST00000557933 HSF4Q9ULV5 492 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms