RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PTGFRP43088 359 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 COL10A1Q03692 680 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 RSU1Q15404 277 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 TRAM1Q15629 374 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 CHRFAM7AQ494W8 412 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 CD276Q5ZPR3 534 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 FIP1L1Q6UN15 594 aaKnown RBP11.88□□□□□ -0.51
USP3-205ENST00000557884 BTNL3Q6UXE8 466 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 C1orf229Q6ZS94 237 aaPredicted RBP11.88□□□□□ -0.51
USP3-205ENST00000557884 ASCC1Q8N9N2 400 aaKnown RBP11.88□□□□□ -0.51
USP3-205ENST00000557884 PNLDC1Q8NA58 520 aaKnown RBP11.88□□□□□ -0.51
USP3-205ENST00000557884 FCGR1BQ92637 280 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 MUL1Q969V5 352 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 HMG20AQ9NP66 347 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 NDUFB11Q9NX14 153 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 OPN4Q9UHM6 478 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 CDC42EP3Q9UKI2 254 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 GSTK1Q9Y2Q3 226 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 MALRD1Q5VYJ5 2156 aa11.88□□□□□ -0.51
USP3-205ENST00000557884 YLPM1P49750 1951 aaKnown RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 J3QLI3 93 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 CCRL2O00421 344 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 ENSAO43768 121 aaKnown RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 HAND1O96004 215 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 GATA3P23771 443 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 SRP14P37108 136 aaKnown RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 LRRTM1Q86UE6 522 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 PXT1Q8NFP0 134 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 TSPAN14Q8NG11 270 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 DACT3Q96B18 629 aaPredicted RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 NR1H4Q96RI1 486 aaPredicted RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 MRI1Q9BV20 369 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 CNTD2Q9H8S5 307 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 LPAR3Q9UBY5 353 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 RPUSD1Q9UJJ7 312 aaKnown RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 MRPS28Q9Y2Q9 187 aaKnown RBP11.87□□□□□ -0.51
USP3-205ENST00000557884 MXRA5Q9NR99 2828 aa11.87□□□□□ -0.51
USP3-205ENST00000557884 KIR2DS1A0A191URI9 304 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 SIRPB1O00241 398 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 HTR3BO95264 441 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 ECDO95905 644 aaPredicted RBP11.86□□□□□ -0.51
USP3-205ENST00000557884 SRMP19623 302 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 CALRP27797 417 aaKnown RBP11.86□□□□□ -0.51
USP3-205ENST00000557884 PAX8Q06710 450 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 SCN1BQ07699 218 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 PDCD1Q15116 288 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 ZNF561Q8N587 486 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 NKAIN3Q8N8D7 197 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 OR4D6Q8NGJ1 314 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 PHYHIPQ92561 330 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 S100A13Q99584 98 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 SLITRK2Q9H156 845 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 METTL9Q9H1A3 318 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 ZNF696Q9H7X3 374 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 EXOSC4Q9NPD3 245 aaKnown RBP11.86□□□□□ -0.51
USP3-205ENST00000557884 GLS2Q9UI32 602 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 AUP1Q9Y679 476 aa11.86□□□□□ -0.51
USP3-205ENST00000557884 NAV3Q8IVL0 2385 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 CUBNO60494 3623 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 A0A087WXM4 84 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 TMEM82A0PJX8 343 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 MEGF11A6BM72 1044 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 ARL6IP5O75915 188 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 CHRM2P08172 466 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 HOXB4P17483 251 aaPredicted RBP11.85□□□□□ -0.51
USP3-205ENST00000557884 SRD5A1P18405 259 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 SERPINA2P20848 420 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 GABRR1P24046 479 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 MTNR1BP49286 362 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 CAV3P56539 151 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 FGF12P61328 243 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 ZNF146Q15072 292 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 PIGYQ3MUY2 71 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 SLC22A6Q4U2R8 563 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 SPIN3Q5JUX0 258 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 AWAT2Q6E213 333 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 GLIPR1L1Q6UWM5 242 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 ASCL4Q6XD76 172 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 FAM185AQ8N0U4 392 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 OR4M1Q8NGD0 313 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 DCTN5Q9BTE1 182 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 CHST6Q9GZX3 395 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 ONECUT1Q9UBC0 465 aa11.85□□□□□ -0.51
USP3-205ENST00000557884 ARHGAP32A7KAX9 2087 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 IGHV3OR16-10A0A075B7F0 116 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 A0A1W2PP11 408 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 A0A1W2PQ09 198 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 K7N7A8 449 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 SH2D1BO14796 132 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 GPR37O15354 613 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 ZNF737O75373 536 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 OR2H2O95918 312 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 TK1P04183 234 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 PPIAL4GP0DN37 164 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 ZNF44P15621 663 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 ARF6P62330 175 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 EDDM3AQ14507 147 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 SYT6Q5T7P8 510 aaPredicted RBP11.84□□□□□ -0.51
USP3-205ENST00000557884 GLT8D1Q68CQ7 371 aa11.84□□□□□ -0.51
USP3-205ENST00000557884 ELP2Q6IA86 826 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms