RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZP1P60852 638 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 RPL31P62899 125 aaKnown RBP11.26□□□□□ -0.61
SHMT2-219ENST00000555563 ACTG1P63261 375 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 BAMBIQ13145 260 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 KLRD1Q13241 179 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 C6orf141Q5SZD1 244 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 METAP1DQ6UB28 335 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-219ENST00000555563 FIP1L1Q6UN15 594 aaKnown RBP11.26□□□□□ -0.61
SHMT2-219ENST00000555563 GHSRQ92847 366 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 PGLYRP3Q96LB9 341 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 VCX3BQ9H321 246 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 METTL8Q9H825 291 aaKnown RBP11.26□□□□□ -0.61
SHMT2-219ENST00000555563 HMG20AQ9NP66 347 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 ZNF281Q9Y2X9 895 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 TRBV5-5A0A0J9YX44 114 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 TMEM82A0PJX8 343 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 RNASEK-C17orf49H0YIS7 233 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 CDK1P06493 297 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 CHRM2P08172 466 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 PRTN3P24158 256 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 TAS2R43P59537 309 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 ZNF273Q14593 569 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 KISS1Q15726 138 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 SPIN3Q5JUX0 258 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 IZUMO2Q6UXV1 221 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 SAXO1Q8IYX7 474 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 OR8H2Q8N162 312 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 PIP4P2Q8N4L2 257 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 SGCDQ92629 289 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 TNFRSF14Q92956 283 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 NKX3-1Q99801 234 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-219ENST00000555563 ANKRD60Q9BZ19 345 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 PRDM13Q9H4Q3 707 aa11.25□□□□□ -0.61
SHMT2-219ENST00000555563 ZMAT3Q9HA38 289 aaKnown RBP11.25□□□□□ -0.61
SHMT2-219ENST00000555563 PAK1IP1Q9NWT1 392 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-219ENST00000555563 A0A0U1RQK1 487 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 CLDN34H7C241 214 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 GABRPO00591 440 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 HOXA3O43365 443 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 PSPNO60542 156 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 TMEM225BP0DP42 221 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 CCL3L1P16619 93 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 MYF6P23409 242 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 EDDM3BP56851 147 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 RPS11P62280 158 aaKnown RBP eCLIP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 GUCA2AQ02747 115 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 BLMHQ13867 455 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 EDDM3AQ14507 147 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 ZNF146Q15072 292 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 SLC9A3R2Q15599 337 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 YIF1BQ5BJH7 314 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 NCR3LG1Q68D85 454 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 TMEM200BQ69YZ2 307 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 C17orf107Q6ZR85 190 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 C1orf122Q6ZSJ8 110 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 PNKDQ8N490 385 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 NANOGP1Q8N7R0 232 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 ZSCAN4Q8NAM6 433 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 OR52N4Q8NGI2 321 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 ZDHHC16Q969W1 377 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 ORAI1Q96D31 301 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 CPNE2Q96FN4 548 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 UNKLQ9H9P5 680 aaKnown RBP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 SEBOXQ9HB31 216 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-219ENST00000555563 ERGIC3Q9Y282 383 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 GSTK1Q9Y2Q3 226 aa11.24□□□□□ -0.61
SHMT2-219ENST00000555563 A0A1W2PRD5 423 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 A0A1W2PRF3 423 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 A0A1W2PRM7 423 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 MEX3AA1L020 520 aaKnown RBP11.23□□□□□ -0.61
SHMT2-219ENST00000555563 PTGES3LE9PB15 166 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 NPFFO15130 113 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 MAGEB3O15480 346 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 ATP6V1G2O95670 118 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 RNASE1P07998 156 aaKnown RBP11.23□□□□□ -0.61
SHMT2-219ENST00000555563 MELTFP08582 738 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 GABRR1P24046 479 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 PPP3R1P63098 170 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 GRK1Q15835 563 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 Q499Y3 187 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 DDI2Q5TDH0 399 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 HCP5Q6MZN7 132 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 GDPD3Q7L5L3 318 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 TCF23Q7RTU1 214 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 SATL1Q86VE3 508 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 TNFAIP8L1Q8WVP5 186 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 SLC25A28Q96A46 364 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 SNX22Q96L94 193 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 OR14A2Q96R54 314 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 GPER1Q99527 375 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 FAM192AQ9GZU8 254 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 CHST6Q9GZX3 395 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 EXOSC4Q9NPD3 245 aaKnown RBP11.23□□□□□ -0.61
SHMT2-219ENST00000555563 NOX4Q9NPH5 578 aa11.23□□□□□ -0.61
SHMT2-219ENST00000555563 TRAV8-7A0A075B6U6 113 aa11.22□□□□□ -0.61
SHMT2-219ENST00000555563 A0A1W2PPH5 198 aa11.22□□□□□ -0.61
SHMT2-219ENST00000555563 MAGEA13PA6NCF6 341 aa11.22□□□□□ -0.61
SHMT2-219ENST00000555563 HAX1O00165 279 aa11.22□□□□□ -0.61
SHMT2-219ENST00000555563 SIRPB1O00241 398 aa11.22□□□□□ -0.61
SHMT2-219ENST00000555563 OR2H2O95918 312 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms