RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RGS11O94810 467 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 AGFG2O95081 481 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 IGLV1-44P01699 117 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 CA6P23280 308 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 CD34P28906 385 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 ECI1P42126 302 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 IL24Q13007 206 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 PPP1R1AQ13522 171 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 MPV17LQ2QL34 196 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 TMEM185AQ8NFB2 350 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 OR1J1Q8NGS3 322 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 MICU1Q9BPX6 476 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 RTL8AQ9BWD3 113 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 PLK3Q9H4B4 646 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 OPN4Q9UHM6 478 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 ANXA10Q9UJ72 324 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 IGKV1D-8A0A087WSZ0 117 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 ZNF35P13682 527 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 H2BFSP57053 126 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 ARPC4P59998 168 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 SNRPD2P62316 118 aaKnown RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 DHODHQ02127 395 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 SURF2Q15527 256 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 TMEM211Q6ICI0 200 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 HAGHLQ6PII5 290 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 LINC00596Q86U02 117 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 ADAD2Q8NCV1 583 aaKnown RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 TMPRSS13Q9BYE2 586 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 OR51I2Q9H344 312 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 RHOFQ9HBH0 211 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 OR5H1A6NKK0 313 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 SDCBPO00560 298 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 OR7C1O76099 320 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 NPY4RP50391 375 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 NDUFA5Q16718 116 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 AADACL3Q5VUY0 350 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 LPCAT3Q6P1A2 487 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 C11orf88Q6PI97 169 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 GRPEL2Q8TAA5 225 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 MITD1Q8WV92 249 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 CCDC120Q96HB5 630 aa22.52■■□□□ 1.2
CCDC88C-205ENST00000553403 CHD6Q8TD26 2715 aa22.51■■□□□ 1.19
CCDC88C-205ENST00000553403 SYNGR1O43759 233 aa22.51■■□□□ 1.19
CCDC88C-205ENST00000553403 SIX6O95475 246 aa22.51■■□□□ 1.19
CCDC88C-205ENST00000553403 IL13RA1P78552 427 aa22.51■■□□□ 1.19
CCDC88C-205ENST00000553403 C1QTNF6Q9BXI9 259 aa22.51■■□□□ 1.19
CCDC88C-205ENST00000553403 J3QT63 122 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 HLA-GP17693 338 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 CEACAM8P31997 349 aaPredicted RBP22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 ERVS71-1P61550 626 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 TMEM128Q5BJH2 165 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 PHB2Q99623 299 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 SFXN3Q9BWM7 321 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 C5orf66Q9H5L9 145 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 ZNF442Q9H7R0 627 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 C12orf4Q9NQ89 552 aa22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 RCC2Q9P258 522 aaKnown RBP22.5■■□□□ 1.19
CCDC88C-205ENST00000553403 DUS4LO95620 317 aaKnown RBP22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 CECR9P0C854 216 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 AKR1C4P17516 323 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 SRSF4Q08170 494 aaKnown RBP22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 FAM76BQ5HYJ3 339 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 DCAF12L2Q5VW00 463 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 C1orf174Q8IYL3 243 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 MARS2Q96GW9 593 aaKnown RBP22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 ZNF286AQ9HBT8 521 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 NECAP2Q9NVZ3 263 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 SLC25A15Q9Y619 301 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 LRP5LA4QPB2 252 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 F8VVB4 439 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 F8VWA3 439 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 PSG7Q13046 419 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 IL13RA2Q14627 380 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 PDCD1Q15116 288 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 LGALSLQ3ZCW2 172 aaPredicted RBP22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 LY6G6FQ5SQ64 297 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 BRICD5Q6PL45 260 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 OR5M8Q8NGP6 311 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 BCL2L14Q9BZR8 327 aa22.49■■□□□ 1.19
CCDC88C-205ENST00000553403 GTF3C1Q12789 2109 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 ZFHX4Q86UP3 3567 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 OR5H14A6NHG9 310 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 OPRM1P35372 400 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 LIN54Q6MZP7 749 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 BATF2Q8N1L9 274 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 RPRMLQ8N4K4 120 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 KLF14Q8TD94 323 aaPredicted RBP22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 DYRK2Q92630 601 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 EXTL1Q92935 676 aa22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 WDR89Q96FK6 387 aaPredicted RBP22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 RTBDNQ9BSG5 229 aaPredicted RBP22.48■■□□□ 1.19
CCDC88C-205ENST00000553403 FAM208BQ5VWN6 2430 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 PPP3CBP16298 524 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 TDGF1P3P51864 188 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 SRSF7Q16629 238 aaKnown RBP eCLIP22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 ZNF474Q6S9Z5 364 aaPredicted RBP22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 TMEM230Q96A57 120 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 HS3ST6Q96QI5 342 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 DHRS9Q9BPW9 319 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 SLX1AQ9BQ83 275 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms