RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 U3KQV3 271 aa10.09□□□□□ -0.79
VPS29-211ENST00000553128 TMEM269A0A1B0GVZ9 245 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 RIIAD1A6NNX1 92 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 SASH3O75995 380 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 FABP3P05413 133 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 FAM106CPP0CH98 169 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 COX4I1P13073 169 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 ZNF3P17036 446 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 GABRR1P24046 479 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 DUSP1P28562 367 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 CDX1P47902 265 aaPredicted RBP10.08□□□□□ -0.8
VPS29-211ENST00000553128 MFGE8Q08431 387 aaPredicted RBP10.08□□□□□ -0.8
VPS29-211ENST00000553128 IL24Q13007 206 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 DIAPH2-AS1Q14236 149 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 CLVS2Q5SYC1 327 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 ASPHD1Q5U4P2 390 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 TEX38Q6PEX7 206 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 RTN4RL2Q86UN3 420 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 RP9Q8TA86 221 aaKnown RBP10.08□□□□□ -0.8
VPS29-211ENST00000553128 SLAMF9Q96A28 289 aa10.08□□□□□ -0.8
VPS29-211ENST00000553128 CADM1Q9BY67 442 aaKnown RBP10.08□□□□□ -0.8
VPS29-211ENST00000553128 IGKV1-27A0A075B6S5 117 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 DHRS3O75911 302 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 HAND1O96004 215 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 IFNGP01579 166 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 CALCBP10092 127 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 ATP6V1B1P15313 513 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 SPNP16150 400 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 TMEM11P17152 192 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 PEX2P28328 305 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 CD34P28906 385 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 MNDAP41218 407 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 OR3A1P47881 315 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 P2RX3P56373 397 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 PNLIPRP3Q17RR3 467 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 SAMD4BQ5PRF9 694 aaKnown RBP10.07□□□□□ -0.8
VPS29-211ENST00000553128 HEPN1Q6WQI6 88 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 THNSL2Q86YJ6 484 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 DRAM1Q8N682 238 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 ZNF454Q8N9F8 522 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 AQP11Q8NBQ7 271 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 RNFT2Q96EX2 444 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 CEP19Q96LK0 163 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 TTTY10Q9BZA0 68 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 PKIBQ9C010 78 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 MRGBPQ9NV56 204 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 BAIAP2Q9UQB8 552 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 UBE2J1Q9Y385 318 aaPredicted RBP10.07□□□□□ -0.8
VPS29-211ENST00000553128 SORL1Q92673 2214 aa10.07□□□□□ -0.8
VPS29-211ENST00000553128 FAM230AA0A1W2PPH8 454 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 A0A1W2PPI3 338 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 RBMY1BA6NDE4 496 aaKnown RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 RBMY1EA6NEQ0 496 aaKnown RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 CCRL2O00421 344 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 DLGAP1O14490 977 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 TOR1AO14656 332 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 JTBO76095 146 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 TTRP02766 147 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 RBMY1DP0C7P1 496 aaKnown RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 H2AFXP16104 143 aaPredicted RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 ALOX5APP20292 161 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 CEACAM3P40198 252 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 VEGFCP49767 419 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 HMGA2P52926 109 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 PSME3P61289 254 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 ESRRGP62508 458 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 ZNF91Q05481 1191 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 GPR50Q13585 617 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 HES1Q14469 280 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 CXorf66Q5JRM2 361 aaPredicted RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 OR52W1Q6IF63 320 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 FAM53AQ6NSI3 398 aaPredicted RBP10.06□□□□□ -0.8
VPS29-211ENST00000553128 FOXRED2Q8IWF2 684 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 RNF152Q8N8N0 203 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 OR11H1Q8NG94 326 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 GORASP2Q9H8Y8 452 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 DNAJB9Q9UBS3 223 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 SLC7A11Q9UPY5 501 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 KIAA1109Q2LD37 5005 aa10.06□□□□□ -0.8
VPS29-211ENST00000553128 ACOD1A6NK06 481 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 TNFRSF11BO00300 401 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 FGF16O43320 207 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 IGHV3-7P01780 117 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 GPR12P47775 334 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 GLIPR1P48060 266 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 SNU13P55769 128 aaKnown RBP10.05□□□□□ -0.8
VPS29-211ENST00000553128 FAM27D1Q5T7N8 215 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 LCN1P1Q5VSP4 162 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 CCDC144NLQ6NUI1 221 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 BBS1Q8NFJ9 593 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 OR14K1Q8NGZ2 314 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 C4orf3Q8WVX3 66 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 EMG1Q92979 244 aaKnown RBP10.05□□□□□ -0.8
VPS29-211ENST00000553128 TOMM40LQ969M1 308 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 MCUR1Q96AQ8 359 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 RBMXL1Q96E39 390 aaKnown RBP10.05□□□□□ -0.8
VPS29-211ENST00000553128 ISYNA1Q9NPH2 558 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 IL1RAPQ9NPH3 570 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 FGFR1OP2Q9NVK5 253 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 RBFOX1Q9NWB1 397 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms