RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FBXW12Q6X9E4 464 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 OR2W3Q7Z3T1 314 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 MDP1Q86V88 176 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 SGPP2Q8IWX5 399 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM217Q8N7C4 229 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 ZBTB44Q8NCP5 570 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 OR1S2Q8NGQ3 325 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 KCNE4Q8WWG9 221 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 BSCL2Q96G97 398 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RTBDNQ9BSG5 229 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 GPR132Q9UNW8 380 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 LOC102725191A0A1B0GVB3 256 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 SLC22A20A6NK97 555 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 KLRC4-KLRK1H3BQV0 150 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 H3BUI4 141 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 LRP3O75074 770 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CD74P04233 296 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 GSTP1P09211 210 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 HOXA6P31267 233 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 LHX2P50458 406 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CAV2P51636 162 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CLDN18P56856 261 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 UBE2NP61088 152 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 PDZK1IP1Q13113 114 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 SNTB1Q13884 538 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CNN3Q15417 329 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM128Q5BJH2 165 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 C10orf128Q5T292 105 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RPL7L1Q6DKI1 246 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 LYPD6Q86Y78 171 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 OR5AP2Q8NGF4 316 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RFESDQ8TAC1 157 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RTN4IP1Q8WWV3 396 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 PP6455Q8WZ26 134 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 EXTL1Q92935 676 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 EMG1Q92979 244 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 MED30Q96HR3 178 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 PARD6AQ9NPB6 346 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 OBP2BQ9NPH6 170 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RCL1Q9Y2P8 373 aaKnown RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 UBE2J1Q9Y385 318 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-215ENST00000552823 NPTNQ9Y639 398 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 ZFYVE26Q68DK2 2539 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 TRAPPC2LH3BP13 241 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 C1QL1O75973 258 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 APOC1P02654 83 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 FTH1P19P0C7X4 201 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PRF1P14222 555 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 AADACP22760 399 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SUPT4H1P63272 117 aaKnown RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CLLU1Q5K131 121 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 RPUSD3Q6P087 351 aaKnown RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SLC51BQ86UW2 128 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 HOGA1Q86XE5 327 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 MKXQ8IYA7 352 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SCARB1Q8WTV0 552 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 MITD1Q8WV92 249 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SUCNR1Q9BXA5 334 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 OR2J1Q9GZK6 312 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 FAM234AQ9H0X4 552 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 MSL2Q9HCI7 577 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 RABL2AQ9UBK7 228 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 TINAGQ9UJW2 476 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 KCNS2Q9ULS6 477 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 RELNP78509 3460 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PIEZO1Q92508 2521 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF816-ZNF321PA0A0X1KG74 233 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 RNF222A6NCQ9 220 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 OR6C6A6NF89 314 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 NPIPB13A6NJU9 1138 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CD300LBA8K4G0 201 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 NPIPB4C9JG80 1138 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ETV2O00321 342 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CDIPTO14735 213 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SFT2D2O95562 160 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 IFNA21P01568 189 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PRH1P02810 166 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CRHP06850 196 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CST2P09228 141 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CALCRP30988 508 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 GLP1RP43220 463 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 GFRA1P56159 465 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PCBD1P61457 104 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF616Q08AN1 781 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 AADACL3Q5VUY0 350 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 GGNBP1Q5YKI7 109 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CRIP3Q6Q6R5 217 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF565Q8N9K5 539 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ADPRHL1Q8NDY3 354 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PXT1Q8NFP0 134 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 RNF138Q8WVD3 245 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 C17orf50Q8WW18 174 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ADGRG7Q96K78 797 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 FER1L6-AS2Q96M78 137 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SLC5A7Q9GZV3 580 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 BCO1Q9HAY6 547 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SH2D2AQ9NP31 389 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SPRR3Q9UBC9 169 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ANXA10Q9UJ72 324 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SESN1Q9Y6P5 492 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms