RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HTR5AP47898 357 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 NPBWR2P48146 333 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 RGS19P49795 217 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 RBP2P50120 134 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 B3GALT5-AS1P59052 145 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 EIF3IQ13347 325 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 PEA15Q15121 130 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 RAB35Q15286 201 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 FAM76BQ5HYJ3 339 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 MEX3BQ6ZN04 569 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 GGNQ86UU5 652 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 HSD17B11Q8NBQ5 300 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 IP6K3Q96PC2 410 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 C12orf57Q99622 126 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 SH2D2AQ9NP31 389 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 TMEM38BQ9NVV0 291 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 CACFD1Q9UGQ2 172 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ST3GAL6Q9Y274 331 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF716A6NP11 495 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 SLC33A1O00400 549 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 TERTO14746 1132 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 FKBP2P26885 142 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 DVL1P1P54792 670 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 RAC1P63000 192 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 FAM3AP98173 230 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ARL6IP1Q15041 203 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 CEACAM16Q2WEN9 425 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 IGSF11Q5DX21 431 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 AVPI1Q5T686 147 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 EIF5AL1Q6IS14 154 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 SKA3Q8IX90 412 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 OSR2Q8N2R0 312 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 GPR137CQ8N3F9 429 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 OR14L1PQ8NHC6 308 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 PIGCQ92535 297 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ISOC2Q96AB3 205 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 SPSB1Q96BD6 273 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 MSI2Q96DH6 328 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 C14orf79Q96F83 325 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF845Q96IR2 970 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 TP53RKQ96S44 253 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 SCRT1Q9BWW7 348 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF700Q9H0M5 742 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 WDR54Q9H977 334 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 CRIM1Q9NZV1 1036 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 RCL1Q9Y2P8 373 aaKnown RBP6.49□□□□□ -1.37
LIMA1-213ENST00000552720 MED13Q9UHV7 2174 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 KIAA2026Q5HYC2 2103 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 MED12LQ86YW9 2145 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 NSG1A0A0A6YYJ2 146 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 PHF1O43189 567 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 GAPDHP04406 335 aaKnown RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CFIP05156 583 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 KLK3P07288 261 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 EDN3P14138 238 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CBR1P16152 277 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 AADACP22760 399 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HOXA1P49639 335 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CLDN15P56746 228 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 EIF5AP63241 154 aaKnown RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 PPA1Q15181 289 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CNN3Q15417 329 aaKnown RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 WIPI1Q5MNZ9 446 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 C9orf135Q5VTT2 229 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 AAED1Q7RTV5 226 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 SUMF1Q8NBK3 374 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 UBAC2Q8NBM4 344 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 AGBL5Q8NDL9 886 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 ABHD3Q8WU67 409 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HPSE2Q8WWQ2 592 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 C10orf35Q96D05 121 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 C18orf12Q96KH6 178 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HS3ST6Q96QI5 342 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 WNT5BQ9H1J7 359 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 RPS10P5Q9NQ39 176 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 COA4Q9NYJ1 87 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HSF4Q9ULV5 492 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 KCNIP3Q9Y2W7 256 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 SPENQ96T58 3664 aaKnown RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 ARHGAP21Q5T5U3 1957 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 hCG_38984A0A1B0GV85 526 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 OR6C6A6NF89 314 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 E5RGE8 158 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CBR3O75828 277 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 TRAPPC6AO75865 159 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 OR7C1O76099 320 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 NXPH3O95157 252 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 TSPAN15O95858 294 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 APOC1P02654 83 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HEXAP06865 529 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 SNRNP70P08621 437 aaKnown RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CCL2P13500 99 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 SNCAP37840 140 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 ECI1P42126 302 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CARD18P57730 90 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 MLF1P58340 268 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 Q0VFX4 171 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 HABP2Q14520 560 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 GUK1Q16774 197 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 AWAT1Q58HT5 328 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms