RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ZNF670-ZNF695F2Z2N8 137 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 F2RL2O00254 374 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 PEX14O75381 377 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 GATBO75879 557 aaKnown RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 DNAJC8O75937 253 aaPredicted RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 RAB13P51153 203 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 EDDM3BP56851 147 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 OR12D2P58182 307 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 EFNB1P98172 346 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 FLOT2Q14254 428 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 SSX2Q16385 188 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 NSUN5P1Q3KNT7 163 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 PLA1AQ53H76 456 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 LDLRAD2Q5SZI1 272 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 AADACL4Q5VUY2 407 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 NXNL2Q5VZ03 156 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 ZBTB49Q6ZSB9 765 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 GDPD3Q7L5L3 318 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 SPATA24Q86W54 205 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 ANGPTL5Q86XS5 388 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 TMEM219Q86XT9 240 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 GID4Q8IVV7 300 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 LYG1Q8N1E2 194 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 CCDC54Q8NEL0 328 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 TRMT10AQ8TBZ6 339 aaKnown RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 SGCDQ92629 289 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 R3HDM4Q96D70 268 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 CEP19Q96LK0 163 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 CITED2Q99967 270 aaPredicted RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 APOL4Q9BPW4 351 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 MMP28Q9H239 520 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 SEBOXQ9HB31 216 aaPredicted RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 FAM53CQ9NYF3 392 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 MTCH1Q9NZJ7 389 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 MRM2Q9UI43 246 aaKnown RBP6.13□□□□□ -1.43
NEK3-201ENST00000550331 SLC7A11Q9UPY5 501 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 LINC00312Q9Y6C7 94 aa6.13□□□□□ -1.43
NEK3-201ENST00000550331 FAM230AA0A1W2PPH8 454 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 TMEM82A0PJX8 343 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 A6NIN4 97 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ZAR1LA6NP61 321 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 H3BUI4 141 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 MAGEB4O15481 346 aaPredicted RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 SYT7O43581 403 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 KRT8P05787 483 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 VDAC2P45880 294 aaPredicted RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 DAPP51397 102 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 FUT6P51993 359 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ACTA2P62736 377 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ACTG2P63267 376 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ACTC1P68032 377 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ACTA1P68133 377 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 DYNC1I2Q13409 638 aaKnown RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 IL18R1Q13478 541 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 DNAL1Q4LDG9 190 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 SLX4IPQ5VYV7 408 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 C12orf73Q69YU5 71 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 C11orf87Q6NUJ2 197 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 PLEKHG7Q6ZR37 379 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 TCF23Q7RTU1 214 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 C16orf82Q7Z2V1 217 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 CATSPERDQ86XM0 798 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 WFDC3Q8IUB2 231 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 Q8IYB0 196 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 ENTHD1Q8IYW4 607 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 BATF2Q8N1L9 274 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 TMEM163Q8TC26 289 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 PHF21AQ96BD5 680 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 C10orf35Q96D05 121 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 AKR1E2Q96JD6 320 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 SNX22Q96L94 193 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 CLEC7AQ9BXN2 247 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 CADM1Q9BY67 442 aaKnown RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 CHST5Q9GZS9 411 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 TMEM133Q9H2Q1 129 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 KRT84Q9NSB2 600 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 AURKAIP1Q9NWT8 199 aaPredicted RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 H2AFY2Q9P0M6 372 aaPredicted RBP6.12□□□□□ -1.43
NEK3-201ENST00000550331 SESN1Q9Y6P5 492 aa6.12□□□□□ -1.43
NEK3-201ENST00000550331 IGKV1-27A0A075B6S5 117 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 IGHV2-26A0A0B4J1V2 119 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 FAM90A22PA8MWA6 464 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 F8VVB4 439 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 F8VWA3 439 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 MGST3O14880 152 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 GYG2O15488 501 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 SULT1C4O75897 302 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 RPP14O95059 124 aaKnown RBP6.11□□□□□ -1.43
NEK3-201ENST00000550331 HAND1O96004 215 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 SERPINA3P01011 423 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 OR2T7P0C7T2 308 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 PEX2P28328 305 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 ERP29P30040 261 aaKnown RBP6.11□□□□□ -1.43
NEK3-201ENST00000550331 RBP2P50120 134 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 CDC42P60953 191 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 BLCAPP62952 87 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 CD83Q01151 205 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 SLC34A1Q06495 639 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 EDDM3AQ14507 147 aa6.11□□□□□ -1.43
NEK3-201ENST00000550331 UBE2V2Q15819 145 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms