RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SLC7A6OSQ96CW6 309 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 NRBF2Q96F24 287 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 NKX3-1Q99801 234 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 IFT22Q9H7X7 185 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 ZNF702PQ9H963 129 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 RAB18Q9NP72 206 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 SERTAD4Q9NUC0 356 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 H2AFY2Q9P0M6 372 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 NKX1-2Q9UD57 310 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 POMPQ9Y244 141 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 POLDIP2Q9Y2S7 368 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 CMYA5Q8N3K9 4069 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 IGKV1-27A0A075B6S5 117 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 hCG_1809904A0A1W2PP81 198 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 A0A1W2PPE2 198 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 FAM230AA0A1W2PPH8 454 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 A0A1W2PR64 198 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 A0A1W2PRV1 198 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 A6NDX4 124 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 ZAR1LA6NP61 321 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 ZNF670-ZNF695F2Z2N8 137 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 H3BSH0 61 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 K7N7A8 449 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 ZNF737O75373 536 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 INMTO95050 263 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 RPP14O95059 124 aaKnown RBP6.83□□□□□ -1.32
USP28-215ENST00000545608 ARG1P05089 322 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 CD28P10747 220 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 CCL1P22362 96 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 ACTR3P61158 418 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 IL24Q13007 206 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 LSAMPQ13449 338 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 MED21Q13503 144 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 UBE2V2Q15819 145 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 FAM189A2Q15884 450 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 ODF4Q2M2E3 257 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 CNPY1Q3B7I2 92 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 KPRPQ5T749 579 aaPredicted RBP6.83□□□□□ -1.32
USP28-215ENST00000545608 SLX4IPQ5VYV7 408 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 NXNL2Q5VZ03 156 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 C12orf73Q69YU5 71 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 CROCCP3Q8IVE0 287 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 Q8N2B8 174 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 TMEM163Q8TC26 289 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 IL4I1Q96RQ9 567 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 MNTQ99583 582 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 TBX5Q99593 518 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 PKIBQ9C010 78 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 NPFFR1Q9GZQ6 430 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 MOB1AQ9H8S9 216 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 CLN6Q9NWW5 311 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 PTTG2Q9NZH5 202 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 MTCH1Q9NZJ7 389 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 TCF19Q9Y242 345 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 SNX5Q9Y5X3 404 aa6.83□□□□□ -1.32
USP28-215ENST00000545608 TMEM82A0PJX8 343 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 DHRS7CA6NNS2 312 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 ODF3BA8MYP8 253 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 H3BS24 57 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 CHRM2P08172 466 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 ZNF728P0DKX0 622 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 JUNBP17275 347 aaPredicted RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 EDDM3BP56851 147 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 SSX2Q16385 188 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 NSUN5P1Q3KNT7 163 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 FBLN7Q53RD9 439 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 ZNF626Q68DY1 528 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 TCF23Q7RTU1 214 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 CATSPERDQ86XM0 798 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 TMEM219Q86XT9 240 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 YIPF7Q8N8F6 280 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 ASCC1Q8N9N2 400 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 OR11H6Q8NGC7 330 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 OR13D1Q8NGV5 346 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 WIPF2Q8TF74 440 aaPredicted RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 SLAMF9Q96A28 289 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 DGCR14Q96DF8 476 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 MALSU1Q96EH3 234 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 CADM1Q9BY67 442 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 KRT84Q9NSB2 600 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 PAIP2BQ9ULR5 123 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 SLC7A11Q9UPY5 501 aa6.82□□□□□ -1.32
USP28-215ENST00000545608 TBL2Q9Y4P3 447 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 TET2Q6N021 2002 aaPredicted RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 PRKDCP78527 4128 aaKnown RBP6.82□□□□□ -1.32
USP28-215ENST00000545608 A0A1W2PQL4 384 aaPredicted RBP6.81□□□□□ -1.32
USP28-215ENST00000545608 SYT7O43581 403 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 APOL3O95236 402 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 KRT8P05787 483 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 IGHV1-8P0DP01 117 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 POLR2IP36954 125 aaKnown RBP6.81□□□□□ -1.32
USP28-215ENST00000545608 BLCAPP62952 87 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 CNN3Q15417 329 aaKnown RBP6.81□□□□□ -1.32
USP28-215ENST00000545608 KDM4DQ6B0I6 523 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 Q6ZPA2 131 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 GDPD3Q7L5L3 318 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 OR8H2Q8N162 312 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 TPRX1Q8N7U7 411 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 DTX3Q8N9I9 347 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 OR52N4Q8NGI2 321 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms