RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 AAED1Q7RTV5 226 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 SMIM8Q96KF7 97 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 TP53RKQ96S44 253 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 SEC11CQ9BY50 192 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 SPACA1Q9HBV2 294 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 NDRG3Q9UGV2 375 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 ZDHHC8Q9ULC8 765 aa13.04□□□□□ -0.32
USP28-214ENST00000545540 EP300Q09472 2414 aaPredicted RBP13.04□□□□□ -0.32
USP28-214ENST00000545540 MED13Q9UHV7 2174 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 hCG_1809904A0A1W2PP81 198 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 A0A1W2PR64 198 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 A0A1W2PRV1 198 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 CRYM-AS1A6NIL9 109 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 KCNMB1Q16558 191 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 TMEM182Q6ZP80 229 aaPredicted RBP13.03□□□□□ -0.32
USP28-214ENST00000545540 SIT1Q9Y3P8 196 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 ARHGAP21Q5T5U3 1957 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 NCKAP5O14513 1909 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 CEP250Q9BV73 2442 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 A0A0U1RQV5 110 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 FAM24AA6NFZ4 105 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 PET100P0DJ07 73 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 AADACP22760 399 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 OR2B8PP59922 312 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 DHRS7BQ6IAN0 325 aaPredicted RBP13.03□□□□□ -0.32
USP28-214ENST00000545540 FBXW12Q6X9E4 464 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 SLC16A14Q7RTX9 510 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 SLC16A13Q7RTY0 426 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 SKA3Q8IX90 412 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 OR1F12Q8NHA8 337 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 GLYATL2Q8WU03 294 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 NAT6Q93015 286 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 TMEM54Q969K7 222 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 RARRES2Q99969 163 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 A6NLC8 198 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 CST4P01036 141 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 PPP1CCP36873 323 aaKnown RBP13.03□□□□□ -0.32
USP28-214ENST00000545540 CAMLGP49069 296 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 SPINK14Q6IE38 97 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 OPN5Q6U736 354 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 ZNF488Q96MN9 340 aa13.03□□□□□ -0.32
USP28-214ENST00000545540 SMG1Q96Q15 3661 aaKnown RBP13.03□□□□□ -0.32
USP28-214ENST00000545540 ICE1Q9Y2F5 2266 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 PINLYPA6NC86 204 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 CST7O76096 145 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 POLR2GP62487 172 aaKnown RBP eCLIP13.02□□□□□ -0.32
USP28-214ENST00000545540 TLE1Q04724 770 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 TSC22D1Q15714 1073 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 SHEQ5VZ18 495 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 FAM180AQ6UWF9 173 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 BTNL8Q6UX41 500 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 FAM213BQ8TBF2 198 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 NEK7Q8TDX7 302 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 FOXD3Q9UJU5 478 aaPredicted RBP13.02□□□□□ -0.32
USP28-214ENST00000545540 CARHSP1Q9Y2V2 147 aaKnown RBP13.02□□□□□ -0.32
USP28-214ENST00000545540 KCNIP3Q9Y2W7 256 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 ADAMTS20P59510 1910 aa13.02□□□□□ -0.32
USP28-214ENST00000545540 SYNGR3O43761 229 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 IGLV3-1P01715 115 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 FBP1P09467 338 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 DSCR4P56555 118 aaPredicted RBP13.02□□□□□ -0.33
USP28-214ENST00000545540 TMEM268Q5VZI3 342 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 GPR137CQ8N3F9 429 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 SLC35G3Q8N808 338 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 IMMP1LQ96LU5 166 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 NUDT16L1Q9BRJ7 211 aaKnown RBP13.02□□□□□ -0.33
USP28-214ENST00000545540 TM2D1Q9BX74 207 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 HES7Q9BYE0 225 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 PISDQ9UG56 409 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 GVINP1Q7Z2Y8 2422 aa13.02□□□□□ -0.33
USP28-214ENST00000545540 A0A1W2PPH5 198 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 H3BP45 60 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 SULT1A2P50226 295 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 AVPI1Q5T686 147 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 OR10D3Q8NH80 312 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 DEPPQ9NTK1 212 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 NECAP2Q9NVZ3 263 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 NKX2-6A6NCS4 301 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 HLA-HP01893 362 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 CTSDP07339 412 aaPredicted RBP13.01□□□□□ -0.33
USP28-214ENST00000545540 CELA3AP09093 270 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 CHATP28329 748 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 CLDN15P56746 228 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 CCL20P78556 96 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 GTF3C1Q12789 2109 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 TMEM187Q14656 261 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 C3AR1Q16581 482 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 ADPRHL1Q8NDY3 354 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 CPEB3Q8NE35 698 aaKnown RBP13.01□□□□□ -0.33
USP28-214ENST00000545540 OTX1P32242 354 aaPredicted RBP13.01□□□□□ -0.33
USP28-214ENST00000545540 AWAT1Q58HT5 328 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 C10orf128Q5T292 105 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 FAM27BQ5VT28 67 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 ADAM5Q6NVV9 412 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 IL34Q6ZMJ4 242 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 OSR2Q8N2R0 312 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 FAM24BQ8N5W8 94 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 ZFP62Q8NB50 900 aaPredicted RBP13.01□□□□□ -0.33
USP28-214ENST00000545540 NTNG2Q96CW9 530 aa13.01□□□□□ -0.33
USP28-214ENST00000545540 NAA60Q9H7X0 242 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms