RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SIT1Q9Y3P8 196 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 LAMA1P25391 3075 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 SPAG17Q6Q759 2223 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 A6NLC8 198 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 BCAT2O15382 392 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 PDCD6O75340 191 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 PRH1P02810 166 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FABP1P07148 127 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 RND3P61587 244 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 TAF9Q16594 264 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 SRSF7Q16629 238 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 AKIRIN2Q53H80 203 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 SLC22A25Q6T423 547 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF574Q6ZN55 896 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 OSR2Q8N2R0 312 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 NANPQ8TBE9 248 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 TCTEX1D2Q8WW35 142 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FBXO17Q96EF6 278 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 BSCL2Q96G97 398 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 GNRHR2Q96P88 292 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 RBM24Q9BX46 236 aaKnown RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 HIPK2Q9H2X6 1198 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 OR51M1Q9H341 326 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 PLSCR2Q9NRY7 297 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 CCDC187A0A096LP49 1063 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A10PA6NDY2 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A18PA6NE21 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A16PA6NEW6 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A20PA6NIJ5 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A8PA6NJQ4 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A7PA6NKC0 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 GJE1A6NN92 205 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A22PA8MWA6 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A12PA8MX19 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A5PA8MXJ8 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A23PA8MXZ1 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 AP4M1O00189 453 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 DIRAS3O95661 229 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 IFNA17P01571 189 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 DBHP09172 617 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A15PP0C7V4 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A13PP0C7W8 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A14PP0C7W9 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FAM90A24PP0C7X0 464 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 MMP9P14780 707 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 LIFP15018 202 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 EWSR1Q01844 656 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 FABP9Q0Z7S8 132 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 MRPL14Q6P1L8 145 aaKnown RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 OR10AD1Q8NGE0 317 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 IP6K3Q96PC2 410 aa11.91□□□□□ -0.5
VPS33A-208ENST00000543633 ZMAT5Q9UDW3 170 aaKnown RBP11.91□□□□□ -0.5
VPS33A-208ENST00000543633 IGKV1-27A0A075B6S5 117 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 OR6C6A6NF89 314 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 S100PP25815 95 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 OPRM1P35372 400 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 EIF2S3P41091 472 aaKnown RBP11.9□□□□□ -0.5
VPS33A-208ENST00000543633 FUT6P51993 359 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 PCOLCEQ15113 449 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 EXT1Q16394 746 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 SP6Q3SY56 376 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 DMRTC1Q5HYR2 192 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 KRBOX4Q5JUW0 171 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 ZIC4Q8N9L1 334 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 OR1F12Q8NHA8 337 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 YPEL4Q96NS1 127 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 SLC25A31Q9H0C2 315 aa11.9□□□□□ -0.5
VPS33A-208ENST00000543633 FAM230AA0A1W2PPH8 454 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TRDCB7Z8K6 153 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 XRCC2O43543 280 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 SPRY1O43609 319 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-208ENST00000543633 ANGPTL7O43827 346 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 AKR1C3P42330 323 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 CXCL12P48061 93 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 RRADP55042 308 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 FXYD4P59646 89 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 RAC1P63000 192 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 MALLQ13021 153 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 CHAF1BQ13112 559 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 HIKESHIQ53FT3 197 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 PHLDA2Q53GA4 152 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 PRAMEF20Q5VT98 475 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 OR2C3Q8N628 320 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 SUMF2Q8NBJ7 301 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 OR52M1Q8NGK5 317 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 OR5L1Q8NGL2 311 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 OR14L1PQ8NHC6 308 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 GSN-AS1Q9NRJ2 163 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 FAM86C1Q9NVL1 165 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 KIAA1456Q9P272 454 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 MYO7BQ6PIF6 2116 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 GON4LQ3T8J9 2241 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 ASXL3Q9C0F0 2248 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 A0A087WWC5 75 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 CLEC18AA5D8T8 446 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 PHF1O43189 567 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-208ENST00000543633 NRASP01111 189 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 OR8U8P0C7N1 319 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 MYF5P13349 255 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TCN2P20062 427 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms