RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	IGKV1-12	A0A0C4DH73	117 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	LNP1	A1A4G5	178 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	VAMP5	O95183	116 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	DUS4L	O95620	317 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	IGKV1D-12	P01611	117 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	IGHV2-5	P01817	119 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	CRYGS	P22914	178 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	CD80	P33681	288 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	C6orf15	Q6UXA7	325 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	GPR137C	Q8N3F9	429 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	SEMA6D	Q8NFY4	1073 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	SPTSSA	Q969W0	71 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	PFDN5	Q99471	154 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	RNF126	Q9BV68	326 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	OR2S2	Q9NQN1	319 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	LRFN1	Q9P244	771 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	FBLN5	Q9UBX5	448 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	DCHS1	Q96JQ0	3298 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	FOXI3	A8MTJ6	420 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	SERPINA5	P05154	406 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	JMJD7	P0C870	316 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	CTSS	P25774	331 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	SRD5A2	P31213	254 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	THBS4	P35443	961 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	CYB561	P49447	251 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	HIST1H3A	P68431	136 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	MRPS34	P82930	218 aa	Known RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	TRA2A	Q13595	282 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	PNLIPRP3	Q17RR3	467 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	HIST2H3PS2	Q5TEC6	136 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	TSPO2	Q5TGU0	170 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	ZNF585A	Q6P3V2	769 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	HIST2H3A	Q71DI3	136 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	OR1F12	Q8NHA8	337 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	ISOC2	Q96AB3	205 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	SULT4A1	Q9BR01	284 aa		12.82	□□□□□ -0.36
DDX55-209	ENST00000542286	ZNF107	Q9UII5	783 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX55-209	ENST00000542286		A0A0U1RQV5	110 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286		A6NLC8	198 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	GEMIN2	O14893	280 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	MPL	P40238	635 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CHRFAM7A	Q494W8	412 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	KRBOX4	Q5JUW0	171 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	ATP1A1-AS1	Q5TC04	95 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	PEAR1	Q5VY43	1037 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	DHRS11	Q6UWP2	260 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SLC16A14	Q7RTX9	510 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	FAM89B	Q8N5H3	189 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	AKR1E2	Q96JD6	320 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	FOXB1	Q99853	325 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	PCNX2	A6NKB5	2137 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SFTPB	P07988	381 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	GPX4	P36969	197 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SP6	Q3SY56	376 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	TMEM128	Q5BJH2	165 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CLEC9A	Q6UXN8	241 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	FOXL2NB	Q6ZUU3	175 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CPEB3	Q8NE35	698 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	PIGC	Q92535	297 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	TOMM40L	Q969M1	308 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	MARS2	Q96GW9	593 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SGCZ	Q96LD1	299 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SMG1	Q96Q15	3661 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	OCSTAMP	Q9BR26	566 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	WNT5B	Q9H1J7	359 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	OR51B6	Q9H340	312 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CACFD1	Q9UGQ2	172 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	DMRT1	Q9Y5R6	373 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	ZNF503-AS2	A6NEH8	195 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CD5	P06127	495 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	NOVA1	P51513	510 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	OR2V1	Q8NHB1	315 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	NTNG2	Q96CW9	530 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	ADGRG7	Q96K78	797 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	SMIM8	Q96KF7	97 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	ZNF2	Q9BSG1	426 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	GGACT	Q9BVM4	153 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	TMPRSS5	Q9H3S3	457 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	METTL8	Q9H825	291 aa	Known RBP	12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CALHM2	Q9HA72	323 aa		12.81	□□□□□ -0.36
DDX55-209	ENST00000542286	CACNA1G	O43497	2377 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	RP1L1	Q8IWN7	2480 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	FIGNL2	A6NMB9	653 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	DBX1	A6NMT0	343 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	LY86	O95711	162 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	PTGER4	P35408	488 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	LPAR6	P43657	344 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	FXYD4	P59646	89 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	S100A10	P60903	97 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	FOXO1	Q12778	655 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	RSU1	Q15404	277 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	SAT2	Q96F10	170 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	HS3ST6	Q96QI5	342 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	IL17B	Q9UHF5	180 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	AK3	Q9UIJ7	227 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	OSGIN2	Q9Y236	505 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	SPTBN2	O15020	2390 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	TRBV6-7	A0A0A0MS04	114 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	HLA-H	P01893	362 aa		12.8	□□□□□ -0.36

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