RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 BAMBIQ13145 260 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 ANKRD55Q3KP44 614 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 KCTD9Q7L273 389 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 TMEM200AQ86VY9 491 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 LINC00052Q96N35 136 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 COMMD9Q9P000 198 aa11.86□□□□□ -0.51
RTN3-210ENST00000540798 PRSS44E7EML9 344 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 SELLP14151 372 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 WT1P19544 449 aaPredicted RBP11.85□□□□□ -0.51
RTN3-210ENST00000540798 GLRA1P23415 457 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 SERPINF1P36955 418 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 RAB14P61106 215 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 CCDC36Q8IYA8 594 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 GMPPAQ96IJ6 420 aaPredicted RBP11.85□□□□□ -0.51
RTN3-210ENST00000540798 CMSS1Q9BQ75 279 aaKnown RBP11.85□□□□□ -0.51
RTN3-210ENST00000540798 CLCF1Q9UBD9 225 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 MUC6Q6W4X9 2439 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 TRBV23-1A0A0A0MS06 115 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 SIGLEC5O15389 551 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 NGFP01138 241 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 WNT5AP41221 380 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 GUSBP1Q15486 140 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 Q6ZPA2 131 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 MRPL21Q7Z2W9 205 aaKnown RBP11.85□□□□□ -0.51
RTN3-210ENST00000540798 FDCSPQ8NFU4 85 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 LIME1Q9H400 295 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 CACNA1HO95180 2353 aa11.85□□□□□ -0.51
RTN3-210ENST00000540798 CTSDP07339 412 aaPredicted RBP11.84□□□□□ -0.51
RTN3-210ENST00000540798 LYL1P12980 280 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 PI3P19957 117 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 HIKESHIQ53FT3 197 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 ZDHHC23Q8IYP9 409 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 ZNF2Q9BSG1 426 aaPredicted RBP11.84□□□□□ -0.51
RTN3-210ENST00000540798 PAPOLGQ9BWT3 736 aaKnown RBP11.84□□□□□ -0.51
RTN3-210ENST00000540798 C12orf49Q9H741 205 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 MED12LQ86YW9 2145 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 NMBP08949 121 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 CCNOP22674 350 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 PTGER4P35408 488 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 NPBWR2P48146 333 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 CYCSP99999 105 aaKnown RBP11.84□□□□□ -0.51
RTN3-210ENST00000540798 PMP22Q01453 160 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 PLP2Q04941 152 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 ZNF273Q14593 569 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 ACOT7LQ6ZUV0 252 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 SLC25A26Q70HW3 274 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 COQ8AQ8NI60 647 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 GLRX2Q9NS18 164 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 NECAP2Q9NVZ3 263 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 RDH8Q9NYR8 311 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 IL15RAQ13261 267 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 TMEM211Q6ICI0 200 aa11.84□□□□□ -0.51
RTN3-210ENST00000540798 ZNHIT1O43257 154 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 BCL2L11O43521 198 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 OR5H8P0DN80 308 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 FUT3P21217 361 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 PSMB6P28072 239 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 UBA52P62987 128 aaKnown RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 SLC9A3R2Q15599 337 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 RGS7BPQ6MZT1 257 aaPredicted RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 Q6ZS49 121 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 OR5A2Q8NGI9 324 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 WDR13Q9H1Z4 485 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 SRSF7Q16629 238 aaKnown RBP eCLIP11.83□□□□□ -0.52
RTN3-210ENST00000540798 TUSC1Q2TAM9 212 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 OR5M9Q8NGP3 310 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 NANOS1Q8WY41 292 aaKnown RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 DYRK2Q92630 601 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 MARS2Q96GW9 593 aaKnown RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 RNF126Q9BV68 326 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 REG4Q9BYZ8 158 aa11.83□□□□□ -0.52
RTN3-210ENST00000540798 CHMP1AQ9HD42 196 aaPredicted RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 RCC2Q9P258 522 aaKnown RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 C14orf166Q9Y224 244 aaKnown RBP11.83□□□□□ -0.52
RTN3-210ENST00000540798 CRYM-AS1A6NIL9 109 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 CD300LBA8K4G0 201 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 EEF1E1-BLOC1S5C9J1V9 151 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 J3QW42 95 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 BCL3P20749 454 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 APLNRP35414 380 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 CCL11P51671 97 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 FGF12P61328 243 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 CLN3Q13286 438 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 ALKAL2Q6UX46 152 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 OR5P3Q8WZ94 311 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 VRK1Q99986 396 aaPredicted RBP11.82□□□□□ -0.52
RTN3-210ENST00000540798 PRR33A8MZF0 331 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 CEACAM4O75871 244 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 OPRM1P35372 400 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 LRRC37A5PQ49AS3 106 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 TFAP2EQ6VUC0 442 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 MDP1Q86V88 176 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 THAP6Q8TBB0 222 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 MBD2Q9UBB5 411 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 C5orf51A6NDU8 294 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 ADAP1O75689 374 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 ZNF14P17017 642 aaPredicted RBP11.82□□□□□ -0.52
RTN3-210ENST00000540798 GPM6AP51674 278 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 TCF15Q12870 199 aa11.82□□□□□ -0.52
RTN3-210ENST00000540798 BRICD5Q6PL45 260 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms