RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LHFPL1Q86WI0 220 aa14.6□□□□□ -0.07
USP28-208ENST00000540438 STRADBQ9C0K7 418 aa14.6□□□□□ -0.07
USP28-208ENST00000540438 CDX4O14627 284 aaPredicted RBP14.59□□□□□ -0.07
USP28-208ENST00000540438 TAS2R46P59540 309 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 RAB1AP62820 205 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 CPT1CQ8TCG5 803 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 ERGIC1Q969X5 290 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 TAAR9Q96RI9 348 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 BARX1Q9HBU1 254 aaPredicted RBP14.59□□□□□ -0.07
USP28-208ENST00000540438 TACC2O95359 2948 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 hCG_38984A0A1B0GV85 526 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 OR6C6A6NF89 314 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 IFNA2P01563 188 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 HNF4GQ14541 408 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 ZNF169Q14929 603 aaPredicted RBP14.59□□□□□ -0.07
USP28-208ENST00000540438 RNFT1Q5M7Z0 435 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 HES3Q5TGS1 186 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 OR52M1Q8NGK5 317 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 RTN4IP1Q8WWV3 396 aaPredicted RBP14.59□□□□□ -0.07
USP28-208ENST00000540438 CYTL1Q9NRR1 136 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 FBLN5Q9UBX5 448 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 SLC7A11Q9UPY5 501 aa14.59□□□□□ -0.07
USP28-208ENST00000540438 RCL1Q9Y2P8 373 aaKnown RBP14.59□□□□□ -0.07
USP28-208ENST00000540438 PHF1O43189 567 aaPredicted RBP14.58□□□□□ -0.07
USP28-208ENST00000540438 TPD52L2O43399 206 aaKnown RBP14.58□□□□□ -0.07
USP28-208ENST00000540438 CST2P09228 141 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 SCTP09683 121 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 SP9P0CG40 484 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 SLC25A4P12235 298 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 ICAM2P13598 275 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 ACP1P24666 158 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 HOXA6P31267 233 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 LHX2P50458 406 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 ERVS71-1P61550 626 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 PNLIPRP3Q17RR3 467 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 BAP18Q8IXM2 172 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 ZNF100Q8IYN0 542 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 ZNF703Q9H7S9 590 aaPredicted RBP14.58□□□□□ -0.07
USP28-208ENST00000540438 C12orf4Q9NQ89 552 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 CUL9Q8IWT3 2517 aa14.58□□□□□ -0.07
USP28-208ENST00000540438 HEATR1Q9H583 2144 aaKnown RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 PKDREJQ9NTG1 2253 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 ABCD4O14678 606 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 YKT6O15498 198 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 SCGNO76038 276 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 CELA3BP08861 270 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 ZNF728P0DKX0 622 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 OR2T2Q6IF00 324 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 LPCAT3Q6P1A2 487 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 HAGHLQ6PII5 290 aaPredicted RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 SGPP2Q8IWX5 399 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 IL1F10Q8WWZ1 152 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 MYOZ1Q9NP98 299 aaPredicted RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 TNRC6BQ9UPQ9 1833 aaKnown RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 SERPINE3A8MV23 424 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 ZNF732B4DXR9 585 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 GP1BAP07359 652 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 CD59P13987 128 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 AADACP22760 399 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 FKBP2P26885 142 aaKnown RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 CHATP28329 748 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 TAS2R31P59538 309 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 ETV3LQ6ZN32 361 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 CXorf67Q86X51 503 aaPredicted RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 CBLN2Q8IUK8 224 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 SHARPINQ9H0F6 387 aa14.58□□□□□ -0.08
USP28-208ENST00000540438 BOKQ9UMX3 212 aaPredicted RBP14.58□□□□□ -0.08
USP28-208ENST00000540438 DOCK11Q5JSL3 2073 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 MMP7P09237 267 aaPredicted RBP14.57□□□□□ -0.08
USP28-208ENST00000540438 ZNF708P17019 499 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 NAT1P18440 290 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 CLDN18P56856 261 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 PRDX4Q13162 271 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 LHFPL5Q8TAF8 219 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 FAM117AQ9C073 453 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 MEOX1P50221 254 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 IKZF1Q13422 519 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 KCNE4Q8WWG9 221 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 C2orf50Q96LR7 162 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 SF3B5Q9BWJ5 86 aaKnown RBP14.57□□□□□ -0.08
USP28-208ENST00000540438 PLA2G2EQ9NZK7 142 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 ZNF107Q9UII5 783 aaPredicted RBP14.57□□□□□ -0.08
USP28-208ENST00000540438 FZR1Q9UM11 496 aa14.57□□□□□ -0.08
USP28-208ENST00000540438 B4E171 279 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 HSD17B6O14756 317 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 RHBDL1O75783 438 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 EIF3GO75821 320 aaKnown RBP eCLIP14.56□□□□□ -0.08
USP28-208ENST00000540438 PLA2G5P39877 138 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 TSPAN7P41732 249 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 CNN3Q15417 329 aaKnown RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 FAM53AQ6NSI3 398 aaPredicted RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 FOXL2NBQ6ZUU3 175 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 MRPL21Q7Z2W9 205 aaKnown RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 PEG10Q86TG7 708 aaKnown RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 MCEMP1Q8IX19 187 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 CPNE4Q96A23 557 aaPredicted RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 APC2O95996 2303 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 TOR1AO14656 332 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 MT-CO3P00414 261 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 ADCYAP1P18509 176 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms