RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 METTL11BQ5VVY1 283 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 MS4A15Q8N5U1 240 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 PXT1Q8NFP0 134 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 DERL3Q96Q80 235 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 PCGF1Q9BSM1 259 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 CCDC90BQ9GZT6 254 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 Q9H521 79 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 BLOC1S6Q9UL45 172 aa16.36■□□□□ 0.21
CPSF1-209ENST00000532725 COL6A5A8TX70 2615 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 TRAV8-7A0A075B6U6 113 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 IGHV3OR16-10A0A075B7F0 116 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 TMEM82A0PJX8 343 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 GABRPO00591 440 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 HAND1O96004 215 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 PRKACAP17612 351 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 FPR2P25090 351 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 DUSP1P28562 367 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 BDKRB2P30411 391 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 MAP2K4P45985 399 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 TPBGQ13641 420 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 C1orf122Q6ZSJ8 110 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 BCL6BQ8N143 479 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-209ENST00000532725 Q8N7P7 452 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 C22orf15Q8WYQ4 148 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 CPNE2Q96FN4 548 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-209ENST00000532725 ISYNA1Q9NPH2 558 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 FOXJ3Q9UPW0 622 aa16.35■□□□□ 0.21
CPSF1-209ENST00000532725 TRBV23-1A0A0A0MS06 115 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 TCF21O43680 179 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 FSTP19883 344 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 EEF1B2P24534 225 aaKnown RBP16.34■□□□□ 0.21
CPSF1-209ENST00000532725 ZNF93P35789 620 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-209ENST00000532725 PTGFRP43088 359 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 INSL4Q14641 139 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 ACSM3Q53FZ2 586 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 SPIN3Q5JUX0 258 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 DDI2Q5TDH0 399 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 ELP2Q6IA86 826 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 FIP1L1Q6UN15 594 aaKnown RBP16.34■□□□□ 0.21
CPSF1-209ENST00000532725 C17orf107Q6ZR85 190 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 C9orf139Q6ZV77 190 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 USP43Q70EL4 1123 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 KIR3DL3Q8N743 410 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 Q8NFD4 153 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 TNFAIP8L1Q8WVP5 186 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 SNX22Q96L94 193 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 GPER1Q99527 375 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 MDFIQ99750 246 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 NKX3-1Q99801 234 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-209ENST00000532725 NOX4Q9NPH5 578 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 C19orf12Q9NSK7 152 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 ONECUT1Q9UBC0 465 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 CKLFQ9UBR5 152 aa16.34■□□□□ 0.21
CPSF1-209ENST00000532725 A0A0A6YYJ9 748 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 TRAV40A0A0B4J280 105 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 CENPVL3A0A0U1RRI6 287 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 MAGEA13PA6NCF6 341 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 GP2P55259 537 aaKnown RBP16.33■□□□□ 0.2
CPSF1-209ENST00000532725 SRSF2Q01130 221 aaKnown RBP16.33■□□□□ 0.2
CPSF1-209ENST00000532725 PDCD1Q15116 288 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 LIPKQ5VXJ0 399 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 TMEM200BQ69YZ2 307 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 ASCC1Q8N9N2 400 aaKnown RBP16.33■□□□□ 0.2
CPSF1-209ENST00000532725 OR4M1Q8NGD0 313 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 OR5D13Q8NGL4 314 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 SLC6A7Q99884 636 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 TMED9Q9BVK6 235 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 YTHDF1Q9BYJ9 559 aaKnown RBP16.33■□□□□ 0.2
CPSF1-209ENST00000532725 GLS2Q9UI32 602 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 GSTK1Q9Y2Q3 226 aa16.33■□□□□ 0.2
CPSF1-209ENST00000532725 SOX21Q9Y651 276 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-209ENST00000532725 SH2D1BO14796 132 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 PSPNO60542 156 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 MRPS14O60783 128 aaKnown RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 SC5DO75845 299 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 HSMCR30P0CW71 290 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 LMO1P25800 156 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 OR3A4PP47883 348 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 MTNR1BP49286 362 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 SNU13P55769 128 aaKnown RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 BPIFB3P59826 476 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 GABARAPL2P60520 117 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 RPL31P62899 125 aaKnown RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 MLLT11Q13015 90 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 Q6P435 159 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 VMO1Q7Z5L0 202 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 LYPD6Q86Y78 171 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 CMTM4Q8IZR5 234 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 OR8H2Q8N162 312 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 BPIFB2Q8N4F0 458 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 ZNF418Q8TF45 676 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 THRSPQ92748 146 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 UFD1Q92890 307 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 MGLLQ99685 303 aa16.32■□□□□ 0.2
CPSF1-209ENST00000532725 MS4A7Q9GZW8 240 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-209ENST00000532725 A0A1W2PQ09 198 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 M0R1W7 72 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 RGS9O75916 674 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 CDRT1O95170 752 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 VENTXO95231 258 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms