RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SRSF10O75494 262 aaKnown RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 HLA-DPB1P04440 258 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 RLN1P04808 185 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 FCER2P06734 321 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 SLC2A1P11166 492 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 NR2C1P13056 603 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 CPN1P15169 458 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ABOP16442 354 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 GIFP27352 417 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 G0S2P27469 103 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 AGTR1P30556 359 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 FGF9P31371 208 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 GUCA1AP43080 201 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 MADCAM1Q13477 382 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 TRAM1Q15629 374 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 HSPB2Q16082 182 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 LINC00303Q3SY05 128 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ACSM3Q53FZ2 586 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 PRR30Q53SZ7 412 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 AWAT1Q58HT5 328 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 HIST2H2BDQ6DRA6 164 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF774Q6NX45 483 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF585AQ6P3V2 769 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 KCTD18Q6PI47 426 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 PCSK4Q6UW60 755 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 NR2C2APQ86WQ0 139 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 CATSPERDQ86XM0 798 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 SERPINA12Q8IW75 414 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF100Q8IYN0 542 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 GCNT2Q8N0V5 402 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 FAM58AQ8N1B3 248 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF283Q8N7M2 679 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF676Q8N7Q3 588 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 CNEP1R1Q8N9A8 125 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 C9orf106Q8NAJ2 232 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 C19orf18Q8NEA5 215 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 OR51A4Q8NGJ6 313 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 OR5AK2Q8NH90 309 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 MCFD2Q8NI22 146 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 RNASE11Q8TAA1 199 aaKnown RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 IL17DQ8TAD2 202 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 DTD1Q8TEA8 209 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 RNF133Q8WVZ7 376 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 BCL2L2Q92843 193 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 PHF21AQ96BD5 680 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 APH1AQ96BI3 265 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 SARAFQ96BY9 339 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 FBXO17Q96EF6 278 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 MROQ9BYG7 248 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 KRTAP4-7Q9BYR0 210 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 SLIRPQ9GZT3 109 aaKnown RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 OPN3Q9H1Y3 402 aaPredicted RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 C1orf198Q9H425 327 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 AUNIPQ9H7T9 357 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 FN3KRPQ9HA64 309 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 NOX4Q9NPH5 578 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 PNRC2Q9NPJ4 139 aaKnown RBP3.59□□□□□ -1.83
CD44-226ENST00000527889 ZC4H2Q9NQZ6 224 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 DIABLOQ9NR28 239 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 SLC7A10Q9NS82 523 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 TMEM38BQ9NVV0 291 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 PARPBPQ9NWS1 579 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 RPH3ALQ9UNE2 315 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 ZNF175Q9Y473 711 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 R4GMQ9 66 aa3.59□□□□□ -1.83
CD44-226ENST00000527889 MAP1AP78559 2803 aaPredicted RBP3.59□□□□□ -1.84
CD44-226ENST00000527889 CRYBG3Q68DQ2 2970 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 A0A0G2JK05 382 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 TRBV5-5A0A0J9YX44 114 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 TMEM269A0A1B0GVZ9 245 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 LOC107986453A0A1B0GWG9 222 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 C5orf63A6NC05 138 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 A6NIN4 97 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 TMEM212A6NML5 194 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 J3QRK9 145 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 P2RY10O00398 339 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 TOR1AO14656 332 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PRRG2O14669 202 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PIN1P1O15428 100 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SGCEO43556 437 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NDUFA2O43678 99 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SC5DO75845 299 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 CRYABP02511 175 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 IFNA6P05013 189 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 CST2P09228 141 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 UCHL1P09936 223 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OR4E1P0C645 316 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OCM2P0CE71 109 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SLC2A2P11168 524 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 ZNF32P17041 273 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SRD5A1P18405 259 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 HNF1AP20823 631 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 AGAP20933 346 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 MYL9P24844 172 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 UCP1P25874 307 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 HSD11B1P28845 292 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OR3A2P47893 321 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 CX3CR1P49238 355 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 RORCP51449 518 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms