RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FAM90A1Q86YD7 464 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 Q8IYB0 196 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 FAM58AQ8N1B3 248 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 MUC20Q8N307 709 aaPredicted RBP12.8□□□□□ -0.36
LSM1-203ENST00000520755 EMG1Q92979 244 aaKnown RBP12.8□□□□□ -0.36
LSM1-203ENST00000520755 KCTD12Q96CX2 325 aaKnown RBP12.8□□□□□ -0.36
LSM1-203ENST00000520755 Q96M66 194 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 TMEM165Q9HC07 324 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 ABRACLQ9P1F3 81 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 ABCA2Q9BZC7 2435 aa12.8□□□□□ -0.36
LSM1-203ENST00000520755 DOCK11Q5JSL3 2073 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 A0A0A6YYD4 124 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 OOEPA6NGQ2 149 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 LGALS8O00214 317 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 TMEM127O75204 238 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 CRTAPO75718 401 aaPredicted RBP12.79□□□□□ -0.36
LSM1-203ENST00000520755 NXPH2O95156 264 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 MPIG6BO95866 241 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 INHBBP09529 407 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 AMY2BP19961 511 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 SOX6P35712 828 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 CEBPDP49716 269 aaPredicted RBP12.79□□□□□ -0.36
LSM1-203ENST00000520755 SNU13P55769 128 aaKnown RBP12.79□□□□□ -0.36
LSM1-203ENST00000520755 RBM11P57052 281 aaKnown RBP12.79□□□□□ -0.36
LSM1-203ENST00000520755 ZNF404Q494X3 552 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 TMEM155Q4W5P6 130 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 NHLRC3Q5JS37 347 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 STUMQ69YW2 141 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 RTN4RL2Q86UN3 420 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 OSR2Q8N2R0 312 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 SPICQ8N5J4 248 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 OR51T1Q8NGJ9 327 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 S100A13Q99584 98 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 TMEM246Q9BRR3 403 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 NICN1Q9BSH3 213 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 TMEM59Q9BXS4 323 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 LPAR5Q9H1C0 372 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 ZNF222Q9UK12 451 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 SPATA2Q9UM82 520 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 PCDHB10Q9UN67 800 aa12.79□□□□□ -0.36
LSM1-203ENST00000520755 MED13LQ71F56 2210 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 IGKV1D-17A0A075B6S4 117 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 TRAV38-1A0A0B4J264 116 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 CEACAM18A8MTB9 384 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 ZNF780AO75290 641 aaPredicted RBP12.78□□□□□ -0.36
LSM1-203ENST00000520755 HEXAP06865 529 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 SCAND1P57086 179 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 RPS27AP62979 156 aaKnown RBP12.78□□□□□ -0.36
LSM1-203ENST00000520755 DYNC1I2Q13409 638 aaKnown RBP12.78□□□□□ -0.36
LSM1-203ENST00000520755 TMEM249Q2WGJ8 235 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 SMIM21Q3B7S5 101 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 KCNG3Q8TAE7 436 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 TM2D1Q9BX74 207 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 CST11Q9H112 138 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 MIXL1Q9H2W2 232 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 ZNF665Q9H7R5 613 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 RHOFQ9HBH0 211 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 RASL12Q9NYN1 266 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 NLKQ9UBE8 527 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 DNAJB11Q9UBS4 358 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 ETV7Q9Y603 341 aa12.78□□□□□ -0.36
LSM1-203ENST00000520755 A0A075B6Q4 140 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 A0A1B0GW55 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 FOXI3A8MTJ6 420 aaPredicted RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 TNFRSF13BO14836 293 aaPredicted RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 GEMIN2O14893 280 aaKnown RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 KNG1P01042 644 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 IGHV2-5P01817 119 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 GYPAP02724 150 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 CSTBP04080 98 aaKnown RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 EIF4EP06730 217 aaKnown RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L2P0CJ85 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L3P0CJ86 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L4P0CJ87 422 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L5P0CJ88 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L6P0CJ89 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L7P0CJ90 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 PSG2P11465 335 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 GTF2F2P13984 249 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 RPS2P15880 293 aaKnown RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 RAB6AP20340 208 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUSP1P28562 367 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 CAPZA1P52907 286 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 LMO4P61968 165 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 GPR176Q14439 515 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 ZNF146Q15072 292 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 PDCD1Q15116 288 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 KCNJ8Q15842 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 MICBQ29980 383 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 SIGIRRQ6IA17 410 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4L9Q6RFH8 374 aaPredicted RBP12.77□□□□□ -0.37
LSM1-203ENST00000520755 CD177Q8N6Q3 437 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 OR5T2Q8NGG2 359 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 ANGPTL6Q8NI99 470 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 ACOT12Q8WYK0 555 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 AP3S1Q92572 193 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 PTX4Q96A99 478 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 RAB39BQ96DA2 213 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 SMR3AQ99954 134 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 MRI1Q9BV20 369 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms