RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SLC25A28Q96A46 364 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 NEIL1Q96FI4 390 aaPredicted RBP9.92□□□□□ -0.82
CUX1-210ENST00000497815 C1orf147Q96MC9 270 aaPredicted RBP9.92□□□□□ -0.82
CUX1-210ENST00000497815 GAFA1Q96PS6 74 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 OR8B2Q96RD0 313 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 RHOFQ9HBH0 211 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 IL36GQ9NZH8 169 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 MIOXQ9UGB7 285 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 STEAP1Q9UHE8 339 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 DAPK2Q9UIK4 370 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 ZNF222Q9UK12 451 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 ST3GAL6Q9Y274 331 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 CCDC160A6NGH7 325 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 NOTOA8MTQ0 251 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 FAM157AC9JC47 383 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 F5H0A9 414 aaPredicted RBP9.91□□□□□ -0.82
CUX1-210ENST00000497815 SIRPB1O00241 398 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 PHF1O43189 567 aaPredicted RBP9.91□□□□□ -0.82
CUX1-210ENST00000497815 NOL3O60936 208 aaKnown RBP9.91□□□□□ -0.82
CUX1-210ENST00000497815 BPNT1O95861 308 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 MPIG6BO95866 241 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 UBBP0CG47 229 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 VSIG8P0DPA2 414 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 GTF2F2P13984 249 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ZNF44P15621 663 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ARSBP15848 533 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 MGMTP16455 207 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 RPS19P39019 145 aaKnown RBP9.91□□□□□ -0.82
CUX1-210ENST00000497815 BMXP51813 675 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 IL13RA1P78552 427 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 LCN2P80188 198 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 COL10A1Q03692 680 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 GPR176Q14439 515 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 TMEM249Q2WGJ8 235 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ESCO2Q56NI9 601 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 SPIN3Q5JUX0 258 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ELP2Q6IA86 826 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 FAM166AQ6J272 317 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 SFXN4Q6P4A7 337 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ZNF788Q6ZQV5 615 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ASCC1Q8N9N2 400 aaKnown RBP9.91□□□□□ -0.82
CUX1-210ENST00000497815 ZNRF1Q8ND25 227 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 TMEM185AQ8NFB2 350 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 OR51D1Q8NGF3 324 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 NDNFQ8TB73 568 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 ST8SIA4Q92187 359 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 FAM3DQ96BQ1 224 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 C18orf12Q96KH6 178 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 COX4I2Q96KJ9 171 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 SELENOIQ9C0D9 397 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 CST11Q9H112 138 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 LIN7BQ9HAP6 207 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 PCDHB16Q9NRJ7 776 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 GHRLQ9UBU3 117 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 GLS2Q9UI32 602 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 MAB21L2Q9Y586 359 aa9.91□□□□□ -0.82
CUX1-210ENST00000497815 CCDC168Q8NDH2 2452 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 AIPO00170 330 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 DVL1O14640 695 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 SH2D1BO14796 132 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 GEMIN2O14893 280 aaKnown RBP9.9□□□□□ -0.82
CUX1-210ENST00000497815 DEGS1O15121 323 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 SIGLEC5O15389 551 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 NDUFB3O43676 98 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 OR2H2O95918 312 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 IGHV4-31P0DP07 118 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 CD99P14209 185 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 GABRR1P24046 479 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 RBM11P57052 281 aaKnown RBP9.9□□□□□ -0.82
CUX1-210ENST00000497815 GNB2P62879 340 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 ZNF146Q15072 292 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 TAF9Q16594 264 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 C2orf76Q3KRA6 126 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 IDNKQ5T6J7 187 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 ATPAF1Q5TC12 328 aaPredicted RBP9.9□□□□□ -0.82
CUX1-210ENST00000497815 Q8NFD4 153 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 SDSLQ96GA7 329 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 MED30Q96HR3 178 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 SSBP3Q9BWW4 388 aaPredicted RBP9.9□□□□□ -0.82
CUX1-210ENST00000497815 DNTTIP1Q9H147 329 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 ZNF581Q9P0T4 197 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 CLN8Q9UBY8 286 aa9.9□□□□□ -0.82
CUX1-210ENST00000497815 OTOGQ6ZRI0 2925 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 TMEM82A0PJX8 343 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 HSPB6O14558 160 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 FCN3O75636 299 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 OR7C1O76099 320 aaPredicted RBP9.89□□□□□ -0.83
CUX1-210ENST00000497815 IL1AP01583 271 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 CHRM2P08172 466 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 INHBBP09529 407 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 SNRPBP14678 240 aaKnown RBP9.89□□□□□ -0.83
CUX1-210ENST00000497815 ZNF16P17020 682 aaPredicted RBP9.89□□□□□ -0.83
CUX1-210ENST00000497815 NDUFB7P17568 137 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 ZFP36P26651 326 aaKnown RBP9.89□□□□□ -0.83
CUX1-210ENST00000497815 TMBIM6P55061 237 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 PLA2G7Q13093 441 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 UNC119Q13432 240 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 BLMHQ13867 455 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 SPCS2Q15005 226 aa9.89□□□□□ -0.83
CUX1-210ENST00000497815 LRRC10Q5BKY1 277 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms