RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 BCL6BQ8N143 479 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 TAF15Q92804 592 aaKnown RBP eCLIP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 ZNF48Q96MX3 618 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-213ENST00000492506 FOXB1Q99853 325 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SSX3Q99909 188 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 TMED9Q9BVK6 235 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 SLITRK2Q9H156 845 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 MMP26Q9NRE1 261 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 MED29Q9NX70 200 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 P2RX2Q9UBL9 471 aa11.09□□□□□ -0.63
HDAC3-213ENST00000492506 PPIAL4EA0A075B759 164 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 A0A087WUJ7 227 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 PPIAL4CA0A0B4J2A2 164 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 PPIAL4DF5H284 164 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 AP4M1O00189 453 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 GPR31O00270 319 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ARPC1BO15143 372 aaKnown RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ARL6IP5O75915 188 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 MT-ND4P03905 459 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 CD1AP06126 327 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 BCHEP06276 602 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 RNASE1P07998 156 aaKnown RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 SBK2P0C263 348 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 PPIAL4FP0DN26 164 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ETFAP13804 333 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 CELP19835 753 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 FPR3P25089 353 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 HTR1FP30939 366 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 CRATP43155 626 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 RAD52P43351 418 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 KLF3P57682 345 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ERVS71-1P61550 626 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 LCN2P80188 198 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 SRSF4Q08170 494 aaKnown RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 TMEM255AQ5JRV8 349 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 FAM74A1Q5RGS3 127 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 OR2G6Q5TZ20 316 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ZNF322Q6U7Q0 402 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 WDR88Q6ZMY6 472 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 Q6ZTK2 550 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 UEVLDQ8IX04 471 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 DEFB108BQ8NET1 73 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 NFKBIDQ8NI38 313 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 SYNPRQ8TBG9 265 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 EDARADDQ8WWZ3 215 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 TMEM19Q96HH6 336 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 ZMAT3Q9HA38 289 aaKnown RBP11.08□□□□□ -0.64
HDAC3-213ENST00000492506 CALML5Q9NZT1 146 aa11.08□□□□□ -0.64
HDAC3-213ENST00000492506 TRAV36DV7A0A075B6V5 113 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 MEX3AA1L020 520 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 FGF16O43320 207 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 GATBO75879 557 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 MT-ND5P03915 603 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 CD3GP09693 182 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 CCL2P13500 99 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 RBM34P42696 430 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 SRP9P49458 86 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 IL13RA1P78552 427 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 DGCR2P98153 550 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 SSBP1Q04837 148 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 RBMS2Q15434 407 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 RBMS3Q6XE24 437 aaKnown RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 COMTD1Q86VU5 262 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 C1QL4Q86Z23 238 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 SLC30A7Q8NEW0 376 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 OR2AK2Q8NG84 335 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 STOML3Q8TAV4 291 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 ZNF519Q8TB69 540 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 FCAMRQ8WWV6 532 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 RAB40AQ8WXH6 277 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 ZNF607Q96SK3 696 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 ULBP2Q9BZM5 246 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 A4GALTQ9NPC4 353 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 KRCC1Q9NPI7 259 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-213ENST00000492506 GHRLQ9UBU3 117 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 DOCK11Q5JSL3 2073 aa11.07□□□□□ -0.64
HDAC3-213ENST00000492506 TRBV4-1A0A0J9YWV2 114 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 A0A1B0GWA3 101 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 ANKRD20A5PA0PJZ0 165 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 RNF222A6NCQ9 220 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 ACOD1A6NK06 481 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 CLDN34H7C241 214 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 CRTAPO75718 401 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-213ENST00000492506 SPDEFO95238 335 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 IFNA17P01571 189 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 BGLAPP02818 100 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 ANXA7P20073 488 aaKnown RBP11.06□□□□□ -0.64
HDAC3-213ENST00000492506 MAKP20794 623 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 AQP1P29972 269 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 SDHAP31040 664 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 SCAND1P57086 179 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 C1orf94Q6P1W5 598 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 DRAM2Q6UX65 266 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 OR2W3Q7Z3T1 314 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 PXKQ7Z7A4 578 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 OR6N1Q8NGY5 312 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 RAB1CQ92928 201 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 RAB3CQ96E17 227 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 TOLLIPQ9H0E2 274 aa11.06□□□□□ -0.64
HDAC3-213ENST00000492506 OR51B6Q9H340 312 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms