RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PROKR2Q8NFJ6 384 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR9K2Q8NGE7 335 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR5L1Q8NGL2 311 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR4K15Q8NH41 348 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RDH11Q8TC12 318 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RORBQ92753 470 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OSTF1Q92882 214 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM203Q969S6 136 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM45BQ96B21 275 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLCO4A1Q96BD0 722 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TM4SF18Q96CE8 201 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RASD2Q96D21 266 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SMIM12Q96EX1 92 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C14orf79Q96F83 325 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CERS2Q96G23 380 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 AURKBQ96GD4 344 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CPB2Q96IY4 423 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PRRC1Q96M27 445 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RDH12Q96NR8 316 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MS4A4EQ96PG1 132 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR5B2Q96R09 309 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR2M4Q96R27 311 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ERGIC2Q96RQ1 377 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 STACQ99469 402 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PHB2Q99623 299 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLC30A2Q9BRI3 323 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CCDC32Q9BV29 185 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TBL1XR1Q9BZK7 514 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CHST5Q9GZS9 411 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 NXF2Q9GZY0 626 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 COMMD4Q9H0A8 199 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MAGT1Q9H0U3 335 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SLITRK2Q9H156 845 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MED28Q9H204 178 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR52A5Q9H2C5 316 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 DHX35Q9H5Z1 703 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 KIR3DX1Q9H7L2 352 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SRD5A3Q9H8P0 318 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RNF122Q9H9V4 155 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RHOFQ9HBH0 211 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ACP6Q9NPH0 428 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SMCO4Q9NRQ5 59 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 RASL12Q9NYN1 266 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 USE1Q9NZ43 259 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ONECUT1Q9UBC0 465 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MARCOQ9UEW3 520 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 OR52A1Q9UKL2 312 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 CLEC4EQ9ULY5 219 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PRPF19Q9UMS4 504 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 SAMD4AQ9UPU9 718 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PSG11Q9UQ72 335 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C14orf166Q9Y224 244 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TRAPPC4Q9Y296 219 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ZFP30Q9Y2G7 519 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 STRAPQ9Y3F4 350 aaKnown RBP1.64□□□□□ -2.15
HMGB1-208ENST00000490788 URGCP-MRPS24S4R325 110 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MYH3P11055 1940 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 ACANP16112 2415 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 EML5Q05BV3 1969 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TRAV9-2A0A087WT02 112 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 KCNE1BA0A087WTH5 132 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TRAV19A0A0A6YYK7 116 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 A0A0D9SFI3 127 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1B0GUH1 482 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1B0GW55 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM218A2RU14 115 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MGAT4DA6NG13 374 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF726A6NNF4 738 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 INMT-MINDY4F8WBC2 141 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 K7EQM0 130 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 K7ERI5 159 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC33A1O00400 549 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MANBAO00462 879 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 BHLHE40O14503 412 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 UBFD1O14562 309 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 IMPA2O14732 288 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ARPC1BO15143 372 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ARPC3O15145 178 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 UBDO15205 165 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PLA2G10O15496 165 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 B4GALT5O43286 388 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR2T1O43869 369 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ORC5O43913 435 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AIREO43918 545 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GNG7O60262 68 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CDC40O60508 579 aaKnown RBP eCLIP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TBX19O60806 448 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NME6O75414 186 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 VPS26AO75436 327 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AQP8O94778 261 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 VENTXO95231 258 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CNIH1O95406 144 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SEMA4FO95754 770 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C1QCP02747 245 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MT-ND4LP03901 98 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 BCHEP06276 602 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SFTPBP07988 381 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ABHD2P08910 425 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR56A5P0C7T3 313 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 UBCP0CG48 685 aaKnown RBP1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms