RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RAB11AP62491 216 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 SPEM2Q0P670 501 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 COL19A1Q14993 1142 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 HIST2H3AQ71DI3 136 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 ZNF610Q8N9Z0 462 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 GALMQ96C23 342 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 MSI2Q96DH6 328 aaKnown RBP12.8□□□□□ -0.36
HDAC6-220ENST00000477528 C20orf24Q9BUV8 137 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 RTN4RQ9BZR6 473 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 FAM234AQ9H0X4 552 aa12.8□□□□□ -0.36
HDAC6-220ENST00000477528 TMEM30CPA0ZSE6 113 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 ZFP92A6NM28 416 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 PRR32B1ATL7 298 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 OR2A4O95047 310 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 BTCP35070 178 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 PSG4Q00888 419 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 ZNF441Q8N8Z8 693 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 WDSUB1Q8N9V3 476 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 OR2A7Q96R45 310 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 TRIP6Q15654 476 aaKnown RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 TSPO2Q5TGU0 170 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 C22orf15Q8WYQ4 148 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 SAT2Q96F10 170 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 RSPO3Q9BXY4 272 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 PSENENQ9NZ42 101 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 ERRFI1Q9UJM3 462 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 PIGYQ3MUY2 71 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 RPL7L1Q6DKI1 246 aaKnown RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 LIAT1Q6ZQX7 453 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 GCNT2Q8N0V5 402 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 C19orf12Q9NSK7 152 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 TMEM14DPA8MWL7 114 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 IAPPP10997 89 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 MST1P26927 711 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 H2BFSP57053 126 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 TMEM33P57088 247 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 TMEM88Q6PEY1 159 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 THNSL2Q86YJ6 484 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 CLRN3Q8NCR9 226 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 FGF11Q92914 225 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 GPR132Q9UNW8 380 aa12.79□□□□□ -0.36
HDAC6-220ENST00000477528 CHCHD2Q9Y6H1 151 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-220ENST00000477528 IGKV1D-43A0A0B4J1Z2 117 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 ADAM20O43506 726 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 CST7O76096 145 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 ELLP55199 621 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-220ENST00000477528 OR2B11Q5JQS5 317 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 C10orf128Q5T292 105 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 LAMP3Q9UQV4 416 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 GPR12P47775 334 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 HAGHQ16775 308 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 POC1BQ8TC44 478 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 RASL12Q9NYN1 266 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 TAAR3PQ9P1P4 343 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 NKX6-3A6NJ46 265 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 PSMB3P49720 205 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 MPV17LQ2QL34 196 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 PRAMEF5Q5TYX0 476 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 PRAMEF6Q5VXH4 476 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 CST9LP1Q5W188 147 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 OR8U1Q8NH10 309 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 SLC2A9Q9NRM0 540 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 GLRX2Q9NS18 164 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 LRRC30A6NM36 301 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 SNCAP37840 140 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 PPP1CBP62140 327 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 ZNF239Q16600 458 aaKnown RBP12.78□□□□□ -0.36
HDAC6-220ENST00000477528 Q5BKY6 102 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 TMEM255AQ5JRV8 349 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 DDA1Q9BW61 102 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 KCNIP2Q9NS61 270 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 SLC2A8Q9NY64 477 aa12.78□□□□□ -0.36
HDAC6-220ENST00000477528 A0A1W2PR80 420 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 PPYP01298 95 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 SFTA3P0C7M3 94 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 SLC25A53Q5H9E4 307 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 STPG2Q8N412 459 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 OR2C3Q8N628 320 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 OR13G1Q8NGZ3 307 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 EDARADDQ8WWZ3 215 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 HDHD3Q9BSH5 251 aaPredicted RBP12.77□□□□□ -0.36
HDAC6-220ENST00000477528 NDRG3Q9UGV2 375 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 NOTCH4Q99466 2003 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 AHCTF1Q8WYP5 2266 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 BTBD17A6NE02 478 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 TRDCB7Z8K6 153 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 ONECUT2O95948 504 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 NMBP08949 121 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 BCL3P20749 454 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 MPGP29372 298 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 ZP1P60852 638 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 C3AR1Q16581 482 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 MIDNQ504T8 468 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 RGS7BPQ6MZT1 257 aaPredicted RBP12.77□□□□□ -0.36
HDAC6-220ENST00000477528 MRPL24Q96A35 216 aaKnown RBP12.77□□□□□ -0.36
HDAC6-220ENST00000477528 TTTY12Q9BZ98 90 aa12.77□□□□□ -0.36
HDAC6-220ENST00000477528 LOC101059948A0A1B0GTJ6 334 aa12.77□□□□□ -0.37
HDAC6-220ENST00000477528 DHRS7CA6NNS2 312 aa12.77□□□□□ -0.37
HDAC6-220ENST00000477528 A8MXE2 369 aa12.77□□□□□ -0.37
HDAC6-220ENST00000477528 MPPED1O15442 326 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms