RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FMODQ06828 376 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF235Q14590 738 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 C18orf21Q32NC0 220 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ATP6AP1LQ52LC2 224 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 CLEC12AQ5QGZ9 265 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 AADACL4Q5VUY2 407 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 RESP18Q5W5W9 173 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 UGT2A3Q6UWM9 527 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 CLEC18BQ6UXF7 455 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ADM2Q7Z4H4 148 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 LINC00596Q86U02 117 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 RBM45Q8IUH3 476 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ST13P4Q8IZP2 240 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 OR8K3Q8NH51 312 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 OR51Q1Q8NH59 317 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 CLHC1Q8NHS4 586 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 UBA3Q8TBC4 463 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 BLNKQ8WV28 456 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 FXYD5Q96DB9 178 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 MSANTD3Q96H12 275 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 PPP1R36Q96LQ0 422 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF396Q96N95 335 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 COPS4Q9BT78 406 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 NXF2Q9GZY0 626 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 XKR8Q9H6D3 395 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 HAUS4Q9H6D7 363 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 SDHAF3Q9NRP4 125 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 INIPQ9NRY2 104 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 NLE1Q9NVX2 485 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF492Q9P255 531 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 TAC3Q9UHF0 121 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 STK38LQ9Y2H1 464 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF706Q9Y5V0 76 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 NID2Q14112 1375 aa1.41□□□□□ -2.18
CCDC88A-212ENST00000474059 NOS1P29475 1434 aa1.4□□□□□ -2.18
CCDC88A-212ENST00000474059 MIA3Q5JRA6 1907 aa1.4□□□□□ -2.18
CCDC88A-212ENST00000474059 A0A1W2PNN7 141 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 GOLGA6L4A6NEF3 574 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 RBFOX3A6NFN3 312 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 IGLL5B9A064 214 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 C4orf51C9J302 202 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 hCG_2039718K7EN88 272 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 UPK2O00526 184 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 FFAR1O14842 300 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 COX7A2P2O60397 106 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 KLHL2O95198 593 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 TPM1P09493 284 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF35P13682 527 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 COL8A2P25067 703 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 CD34P28906 385 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 LCN1P31025 176 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 RANBP1P43487 201 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 NUDT2P50583 147 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 XKP51811 444 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 DSTNP60981 165 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 BIKQ13323 160 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 GPR176Q14439 515 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ACTBL2Q562R1 376 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 LDLRAD2Q5SZI1 272 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 MRPL2Q5T653 305 aaKnown RBP1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ZFAND6Q6FIF0 208 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 TMEM144Q7Z5S9 345 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 CYP4Z1Q86W10 505 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 DRAXINQ8NBI3 349 aaPredicted RBP1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 OR4C13Q8NGP0 309 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 OR2K2Q8NGT1 345 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 YIPF5Q969M3 257 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 FMC1Q96HJ9 113 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ZBED3Q96IU2 234 aaPredicted RBP1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 CPB2Q96IY4 423 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 TSGA10Q9BZW7 698 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 TRIM45Q9H8W5 580 aaPredicted RBP1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 AGPAT3Q9NRZ7 376 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 TAS2R1Q9NYW7 299 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 RBM12B-AS1Q9P1G2 102 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 MMACHCQ9Y4U1 282 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF780BQ9Y6R6 833 aa1.4□□□□□ -2.19
CCDC88A-212ENST00000474059 ZSWIM8A7E2V4 1837 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 IGKV1OR2-108A0A075B7D4 117 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 IGKV2-24A0A0C4DH68 120 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 LOC100506127A0A0U1RQW1 187 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 A0A1B0GW15 77 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 A0A1B0GXF2 115 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 GMNCA6NCL1 334 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 K7EPK0 472 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 ISLRO14498 428 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 GYG2O15488 501 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 RGS5O15539 181 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 SLC37A4O43826 429 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 IGKV5-2P06315 115 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 P0C880 135 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 GIMD1P0DJR0 217 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 CCL2P13500 99 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 HRES1P13985 223 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 RAB38P57729 211 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 BNIP2Q12982 314 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 BAMBIQ13145 260 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 Q3ZCU0 254 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 Q499Y3 187 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 UBE2NLQ5JXB2 153 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms