RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C1QL4Q86Z23 238 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 TPRX1Q8N7U7 411 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 C11orf44Q8N8P7 122 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 TRUB1Q8WWH5 349 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 RNFT2Q96EX2 444 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF714Q96N38 554 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 MBOAT4Q96T53 435 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF702PQ9H963 129 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 NOTCH3Q9UM47 2321 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 H3BNX3 289 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 EI24O14681 340 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 SLC16A6O15403 523 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 AZGP1P25311 298 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 DUSP1P28562 367 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 POU3F4P49335 361 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 OR12D2P58182 307 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 SNRPGP62308 76 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 ACTC1P68032 377 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 ACTA1P68133 377 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 HABP2Q14520 560 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF146Q15072 292 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 GRK1Q15835 563 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 SSX2Q16385 188 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 TMEM244Q5VVB8 128 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 TMEM219Q86XT9 240 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 FAM58AQ8N1B3 248 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 OR51A4Q8NGJ6 313 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 OR10AC1Q8NH08 325 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 FGGYQ96C11 551 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 MALSU1Q96EH3 234 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 NKX3-1Q99801 234 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 LINC00312Q9Y6C7 94 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 KIAA2026Q5HYC2 2103 aa15.16■□□□□ 0.02
CCDC88B-206ENST00000473405 hADV38S2A0JD32 116 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 A6NDX4 124 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 CALCBP10092 127 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 JUNBP17275 347 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 GABRR1P24046 479 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 OR3A1P47881 315 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 ATP1B3P54709 279 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 MTCP1P56278 107 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 ACTA2P62736 377 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 ACTG2P63267 376 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 FAM189A2Q15884 450 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 RNF144BQ7Z419 303 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 KCTD20Q7Z5Y7 419 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 ENTHD1Q8IYW4 607 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 Q8N2B8 174 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 OR4S1Q8NGB4 309 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 PELI1Q96FA3 418 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 CDCA4Q9BXL8 241 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 SERTAD4Q9NUC0 356 aa15.15■□□□□ 0.02
CCDC88B-206ENST00000473405 IGHV2-26A0A0B4J1V2 119 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 IGKV1-12A0A0C4DH73 117 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 DAPL1A0PJW8 107 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 IGKV1D-12P01611 117 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 VSIG10L2P0DP72 767 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 ZNF20P17024 532 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 PRKACAP17612 351 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 ATF1P18846 271 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 PEX2P28328 305 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 CCR9P51686 369 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 SNU13P55769 128 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 PDZK1IP1Q13113 114 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 DYNC1I2Q13409 638 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 ZIK1Q3SY52 487 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 SPIN3Q5JUX0 258 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 LHFPL2Q6ZUX7 228 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 ZNF676Q8N7Q3 588 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 RPS4Y2Q8TD47 263 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 RFT1Q96AA3 541 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 SPSB1Q96BD6 273 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 OPALINQ96PE5 141 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 SESN1Q9Y6P5 492 aa15.14■□□□□ 0.01
CCDC88B-206ENST00000473405 OR4C45A6NMZ5 311 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 MMP23AO75900 390 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 CYB5AP00167 134 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 PRKACBP22694 351 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 ALDH3A2P51648 485 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 DYNLT3P51808 116 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 P2RX3P56373 397 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 MEDAGQ5VYS4 303 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 WIPF2Q8TF74 440 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 LGALS12Q96DT0 336 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 SPACA5Q96QH8 159 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 TMEM133Q9H2Q1 129 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 HMG20AQ9NP66 347 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 ABCB10Q9NRK6 738 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 AASSQ9UDR5 926 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 HHLA2Q9UM44 414 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 EXOGQ9Y2C4 368 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 ORC6Q9Y5N6 252 aa15.13■□□□□ 0.01
CCDC88B-206ENST00000473405 SIRPB1O00241 398 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 MGST3O14880 152 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 MT-ND2P03891 347 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 OPN1MWP04001 364 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 HTR1AP08908 422 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 OPN1MW2P0DN77 364 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 OPN1MW3P0DN78 364 aa15.12■□□□□ 0.01
CCDC88B-206ENST00000473405 GABRB1P18505 474 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms