RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MAGEB3O15480 346 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 CYB5AP00167 134 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ALDOBP05062 364 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 PSMA1P25786 263 aaKnown RBP9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 BDKRB2P30411 391 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 GABRA5P31644 462 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 TGFBR2P37173 567 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ZP1P60852 638 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ERVK11-1P61568 191 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 RPS25P62851 125 aaKnown RBP9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 GNB2P62879 340 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 PAX2Q02962 417 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 PDZK1IP1Q13113 114 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 KISS1Q15726 138 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 TAF9Q16594 264 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 SMIM21Q3B7S5 101 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 BEAN1Q3B7T3 259 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ACSM3Q53FZ2 586 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ARMCX4Q5H9R4 360 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 OLFML2AQ68BL7 652 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 STUMQ69YW2 141 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 LYPD2Q6UXB3 125 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ACP7Q6ZNF0 438 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 RNF144BQ7Z419 303 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 REC114Q7Z4M0 266 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 MKXQ8IYA7 352 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 OR52N4Q8NGI2 321 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 RAB40AQ8WXH6 277 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 SLAMF9Q96A28 289 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 RFT1Q96AA3 541 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 CEP19Q96LK0 163 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 ZNF488Q96MN9 340 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 NOX4Q9NPH5 578 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 SNTG1Q9NSN8 517 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 MTCH1Q9NZJ7 389 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 KAAG1Q9UBP8 84 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 CTSZQ9UBR2 303 aa9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 SF3B6Q9Y3B4 125 aaKnown RBP9.84□□□□□ -0.83
SQSTM1-206ENST00000466342 KIR2DS1A0A191URI9 304 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 OR2AT4A6NND4 320 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 ADAM20O43506 726 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 NXPH2O95156 264 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 PSMB9P28065 219 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 PITPNBP48739 271 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 INSL4Q14641 139 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 SSX1Q16384 188 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 DDI2Q5TDH0 399 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 BTNL3Q6UXE8 466 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 Q8IYB0 196 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 SAXO1Q8IYX7 474 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 BATF2Q8N1L9 274 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 ZSCAN4Q8NAM6 433 aaPredicted RBP9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 OR5T2Q8NGG2 359 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 OR5D18Q8NGL1 313 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 OR4F5Q8NH21 305 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 ANGPTL6Q8NI99 470 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 TMEM203Q969S6 136 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 DNTTIP1Q9H147 329 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 NDUFB11Q9NX14 153 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 CLN8Q9UBY8 286 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 COL7A1Q02388 2944 aa9.83□□□□□ -0.84
SQSTM1-206ENST00000466342 IGKV1D-17A0A075B6S4 117 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 IGHV2-70DA0A0C4DH43 119 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 IGKV1-12A0A0C4DH73 117 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 MAGEA13PA6NCF6 341 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 NKX6-3A6NJ46 265 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 F8VVB4 439 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 F8VWA3 439 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 CCRL2O00421 344 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 GABRPO00591 440 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 ANGPTL7O43827 346 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 KDM4BO94953 1096 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 INMTO95050 263 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 IGKV1D-12P01611 117 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 UCHL1P09936 223 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 PSG2P11465 335 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 AMY2BP19961 511 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 BCL3P20749 454 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 NPY4RP50391 375 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 KRTAP10-3P60369 221 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 KLF17Q5JT82 389 aaPredicted RBP9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 FAM27D1Q5T7N8 215 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 ATPAF1Q5TC12 328 aaPredicted RBP9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 WDR25Q64LD2 544 aaPredicted RBP9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF841Q6ZN19 808 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 TMEM91Q6ZNR0 172 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 SLC36A1Q7Z2H8 476 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 CEACAM19Q7Z692 300 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 SATL1Q86VE3 508 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 NKAIN3Q8N8D7 197 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 TSPAN14Q8NG11 270 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 PHYHIPQ92561 330 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 DACT3Q96B18 629 aaPredicted RBP9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 GPER1Q99527 375 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 CCL13Q99616 98 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 SMURF1Q9HCE7 757 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNF222Q9UK12 451 aa9.82□□□□□ -0.84
SQSTM1-206ENST00000466342 DSCAML1Q8TD84 2053 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 A0A087WXM4 84 aa9.81□□□□□ -0.84
SQSTM1-206ENST00000466342 A0A1B0GW55 424 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms