RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 ST6GALNAC5Q9BVH7 336 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 GHITMQ9H3K2 345 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 MSL2Q9HCI7 577 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 COQ3Q9NZJ6 369 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 RELNP78509 3460 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 CADP27708 2225 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 F5H5P2 479 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 GRPP07492 148 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 DTYMKP23919 212 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 SNU13P55769 128 aaKnown RBP12.11□□□□□ -0.47
USP39-207ENST00000450066 ERVK11-1P61568 191 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 MAB21L1Q13394 359 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 PDCD1Q15116 288 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 MICBQ29980 383 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 VAX1Q5SQQ9 334 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 LRP11Q86VZ4 500 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 GIMAP1Q8WWP7 306 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 WFIKKN1Q96NZ8 548 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 CMSS1Q9BQ75 279 aaKnown RBP12.11□□□□□ -0.47
USP39-207ENST00000450066 NRIP2Q9BQI9 281 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 TLNRD1Q9H1K6 362 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 RCC2Q9P258 522 aaKnown RBP12.11□□□□□ -0.47
USP39-207ENST00000450066 ZNF230Q9UIE0 474 aaPredicted RBP12.11□□□□□ -0.47
USP39-207ENST00000450066 EDARQ9UNE0 448 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 ESPL1Q14674 2120 aa12.11□□□□□ -0.47
USP39-207ENST00000450066 DPRXA6NFQ7 191 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 CCNKO75909 580 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 PGA5P0DJD9 388 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 AMY2BP19961 511 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 TAS2R46P59540 309 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 SELENOVP59797 346 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 IL13RA2Q14627 380 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 NKPD1Q17RQ9 610 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 ATAD3CQ5T2N8 411 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 BRICD5Q6PL45 260 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 LILRB4Q8NHJ6 448 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 CHST6Q9GZX3 395 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 SPACA1Q9HBV2 294 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 NGBQ9NPG2 151 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 IL36RNQ9UBH0 155 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 A0A1B0GUH1 482 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 BOLA2-SMG1P6H3BVE0 249 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 PYCARD-AS1I3L0S3 204 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 NOS1APO75052 506 aaPredicted RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 PMP2P02689 132 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 IFNA6P05013 189 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 RRAS2P62070 204 aaPredicted RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 ADORA2A-AS1P86434 159 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 BSPH1Q075Z2 132 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 VHLLQ6RSH7 139 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 C11orf53Q8IXP5 236 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 PIAS4Q8N2W9 510 aaPredicted RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 MED30Q96HR3 178 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 HDHD3Q9BSH5 251 aaPredicted RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 ZNF442Q9H7R0 627 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 IFT22Q9H7X7 185 aa12.1□□□□□ -0.47
USP39-207ENST00000450066 ZNF701Q9NV72 531 aaPredicted RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 SMG1Q96Q15 3661 aaKnown RBP12.1□□□□□ -0.47
USP39-207ENST00000450066 PLSCR5A0PG75 271 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 UBE2QL1A1L167 161 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 ABCD4O14678 606 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 CSN2P05814 226 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 IKZF1Q13422 519 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 SCGB2B2Q4G0G5 96 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 ARRDC1Q8N5I2 433 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR5AP2Q8NGF4 316 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR5H2Q8NGV7 314 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR6F1Q8NGZ6 308 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 RNASE6Q93091 150 aaKnown RBP12.09□□□□□ -0.47
USP39-207ENST00000450066 SYT3Q9BQG1 590 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR51J1Q9H342 316 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 C12orf4Q9NQ89 552 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 CA10Q9NS85 328 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 IGHV3-64DA0A0J9YX35 117 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 FCGR3AP08637 254 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 METTL11BQ5VVY1 283 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 SLC22A25Q6T423 547 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 POC1AQ8NBT0 407 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR2Z1Q8NG97 314 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 OR13C8Q8NGS7 320 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 MRPL24Q96A35 216 aaKnown RBP12.09□□□□□ -0.47
USP39-207ENST00000450066 BEX2Q9BXY8 128 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 BEX1Q9HBH7 125 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 NBASA2RRP1 2371 aa12.09□□□□□ -0.47
USP39-207ENST00000450066 FAM90A27PA6NNH2 459 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 PTBP3O95758 552 aaKnown RBP12.08□□□□□ -0.48
USP39-207ENST00000450066 RLN1P04808 185 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 IL5P05113 134 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 GLAP06280 429 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 ANXA7P20073 488 aaKnown RBP12.08□□□□□ -0.48
USP39-207ENST00000450066 DUSP1P28562 367 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 CD200P41217 278 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 OR3A3P47888 321 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 CBX3Q13185 183 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 ST3GAL2Q16842 350 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 CHRFAM7AQ494W8 412 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 GLDNQ6ZMI3 551 aaPredicted RBP12.08□□□□□ -0.48
USP39-207ENST00000450066 MAFIPQ8WZ33 124 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 DYRK2Q92630 601 aa12.08□□□□□ -0.48
USP39-207ENST00000450066 MRPL37Q9BZE1 423 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms