RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 OR5H14A6NHG9 310 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 VSIG8P0DPA2 414 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 RPS2P15880 293 aaKnown RBP6.45□□□□□ -1.38
SYNE1-213ENST00000448038 PSMB6P28072 239 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ALDH3B1P43353 468 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SUB1P53999 127 aaKnown RBP eCLIP6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SPANXN5Q5MJ07 72 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ADAM5Q6NVV9 412 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 LINC00114Q6XXX2 140 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 OR5AP2Q8NGF4 316 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SFXN3Q9BWM7 321 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 COMMD5Q9GZQ3 224 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 OR6C3Q9NZP0 311 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 IGHV3-43A0A0B4J1X8 118 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 TMEM210A6NLX4 147 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 F8W036 122 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 IGHV3-43DP0DP04 118 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 CBR1P16152 277 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ATF4P18848 351 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-213ENST00000448038 LIMK1P53667 647 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 MOB3BQ86TA1 216 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ZDHHC22Q8N966 263 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 TMEM54Q969K7 222 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF426Q9BUY5 554 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SUCNR1Q9BXA5 334 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 RTN4RQ9BZR6 473 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 GAL3ST2Q9H3Q3 398 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 PSG11Q9UQ72 335 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 DFFBO76075 338 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 PIGYQ3MUY2 71 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SP6Q3SY56 376 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SLC51BQ86UW2 128 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 LYG1Q8N1E2 194 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 FAM213BQ8TBF2 198 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 MIXL1Q9H2W2 232 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SSSCA1O60232 199 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 C1QBP02746 253 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF708P17019 499 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 SLC25A53Q5H9E4 307 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 C17orf78Q8N4C9 275 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 C2orf50Q96LR7 162 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 S100PP25815 95 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 C19orf57Q0VDD7 668 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 C10orf128Q5T292 105 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 BMPERQ8N8U9 685 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 YIPF5Q969M3 257 aa6.45□□□□□ -1.38
SYNE1-213ENST00000448038 MDC1Q14676 2089 aaKnown RBP6.44□□□□□ -1.38
SYNE1-213ENST00000448038 ANKRD20A5PA0PJZ0 165 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 GPR37O15354 613 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 GABRA6Q16445 453 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 MPV17LQ2QL34 196 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 SNAI3Q3KNW1 292 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 TMUB2Q71RG4 321 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CCDC28AQ8IWP9 274 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 SPACA3Q8IXA5 215 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 DEPPQ9NTK1 212 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 MRPS18CQ9Y3D5 142 aaKnown RBP6.44□□□□□ -1.38
SYNE1-213ENST00000448038 DOCK9Q9BZ29 2069 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 NUP210Q8TEM1 1887 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-213ENST00000448038 MYLKQ15746 1914 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 LGALS8O00214 317 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 IL5P05113 134 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 S100A7P31151 101 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CCL8P80075 99 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 FNDC7Q5VTL7 733 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CDH26Q8IXH8 852 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 ZFP62Q8NB50 900 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-213ENST00000448038 HPSE2Q8WWQ2 592 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 PGLYRP3Q96LB9 341 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 OR5B12Q96R08 314 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 MAGT1Q9H0U3 335 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 WNT5BQ9H1J7 359 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 GP6Q9HCN6 339 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 AK3Q9UIJ7 227 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 KLK13Q9UKR3 277 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 TRBV5-5A0A0J9YX44 114 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 B8ZZF3 427 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CDK2AP1O14519 115 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 IGHV3-13P01766 116 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 IGHV3-7P01780 117 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CRHP06850 196 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 IAPPP10997 89 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 TAS2R30P59541 319 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CEACAM21Q3KPI0 293 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 LAIR2Q6ISS4 152 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 GLDNQ6ZMI3 551 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-213ENST00000448038 TMEM45BQ96B21 275 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 MED30Q96HR3 178 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 LINC00470Q9BZP3 86 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 LIPGQ9Y5X9 500 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 CTDSPLO15194 276 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 KRASP01116 189 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 ISG15P05161 165 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 EFNB2P52799 333 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 PLA1AQ53H76 456 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 Q6ZT83 130 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 ADAMTS17Q8TE56 1095 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 SLC39A9Q9NUM3 307 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 FAM206AQ9NX38 181 aa6.44□□□□□ -1.38
SYNE1-213ENST00000448038 ANXA10Q9UJ72 324 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms