RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 M0QZ24 198 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 PSPNO60542 156 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 IGKV1D-12P01611 117 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 PRKACBP22694 351 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 POU3F4P49335 361 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 RAB13P51153 203 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 LGALS4P56470 323 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 DEFA6Q01524 100 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 PDZK1IP1Q13113 114 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 ALKBH1Q13686 389 aaKnown RBP16.8■□□□□ 0.28
SDC1-205ENST00000447124 GDPD3Q7L5L3 318 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 FAM58AQ8N1B3 248 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 OR4S1Q8NGB4 309 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 CHST6Q9GZX3 395 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 ISG20L2Q9H9L3 353 aaKnown RBP16.8■□□□□ 0.28
SDC1-205ENST00000447124 S100A14Q9HCY8 104 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 AMBNQ9NP70 447 aa16.8■□□□□ 0.28
SDC1-205ENST00000447124 TRBV2A0A0J9YWF9 115 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 ODF3BA8MYP8 253 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 IGHV1-8P0DP01 117 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 KIR2DS4P43632 304 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 EDDM3AQ14507 147 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 ZNF146Q15072 292 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 RFT1Q96AA3 541 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 SPACA5Q96QH8 159 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 HHLA2Q9UM44 414 aa16.79■□□□□ 0.28
SDC1-205ENST00000447124 E9PI62 339 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 CHST1O43916 411 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 ARG1P05089 322 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 DBTP11182 482 aaKnown RBP16.78■□□□□ 0.28
SDC1-205ENST00000447124 ZNF20P17024 532 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 GABRA5P31644 462 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 SNU13P55769 128 aaKnown RBP16.78■□□□□ 0.28
SDC1-205ENST00000447124 MEF2CQ06413 473 aaPredicted RBP16.78■□□□□ 0.28
SDC1-205ENST00000447124 GALEQ14376 348 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 GRK1Q15835 563 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 HIST2H2BDQ6DRA6 164 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 CCBE1Q6UXH8 406 aaPredicted RBP16.78■□□□□ 0.28
SDC1-205ENST00000447124 LHFPL2Q6ZUX7 228 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 Q8IYB0 196 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 OR11H6Q8NGC7 330 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 OPALINQ96PE5 141 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 ALG8Q9BVK2 526 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 MMP27Q9H306 513 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 HMG20AQ9NP66 347 aa16.78■□□□□ 0.28
SDC1-205ENST00000447124 VGLL3A8MV65 326 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 MMP23AO75900 390 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 RBP4P02753 201 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 MT-ND2P03891 347 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 PRKACAP17612 351 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 GABRR1P24046 479 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 PEX2P28328 305 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 EFNB2P52799 333 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 PLA1AQ53H76 456 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 KIAA2026Q5HYC2 2103 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 ZNF626Q68DY1 528 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 OR13D1Q8NGV5 346 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 SPSB1Q96BD6 273 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 ZNF714Q96N38 554 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 C9orf16Q9BUW7 83 aa16.77■□□□□ 0.28
SDC1-205ENST00000447124 LOC100130705A0A1B0GUX0 176 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 hADV38S2A0JD32 116 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 SNTNA6NMZ2 147 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 TSPAN15O95858 294 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 JUNBP17275 347 aaPredicted RBP16.76■□□□□ 0.27
SDC1-205ENST00000447124 OR3A1P47881 315 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 ZBTB49Q6ZSB9 765 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 ZNF676Q8N7Q3 588 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 OR13C3Q8NGS6 347 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 OR13C9Q8NGT0 318 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 MALSU1Q96EH3 234 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 MRPS18AQ9NVS2 196 aaKnown RBP16.76■□□□□ 0.27
SDC1-205ENST00000447124 FAM118AQ9NWS6 357 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 ERVK13-1Q9NX77 482 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 FOXJ3Q9UPW0 622 aa16.76■□□□□ 0.27
SDC1-205ENST00000447124 TBL2Q9Y4P3 447 aaKnown RBP16.76■□□□□ 0.27
SDC1-205ENST00000447124 SIRPB1O00241 398 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 MGST3O14880 152 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 KDM4BO94953 1096 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 ZFPL1O95159 310 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 CYB5AP00167 134 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 ACTA2P62736 377 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 ACTG2P63267 376 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 FAM189A2Q15884 450 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 SSX2Q16385 188 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 C10orf67Q8IYJ2 551 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 SYS1Q8N2H4 156 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 OR5D18Q8NGL1 313 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 APH1BQ8WW43 257 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 ZCCHC4Q9H5U6 513 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 GSTK1Q9Y2Q3 226 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 LINC00312Q9Y6C7 94 aa16.75■□□□□ 0.27
SDC1-205ENST00000447124 A6NDX4 124 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 OR2H2O95918 312 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 LMO1P25800 156 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 ERP29P30040 261 aaKnown RBP16.74■□□□□ 0.27
SDC1-205ENST00000447124 DYNC1I2Q13409 638 aaKnown RBP16.74■□□□□ 0.27
SDC1-205ENST00000447124 SPIN3Q5JUX0 258 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 Q6P435 159 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 BAIAP2L2Q6UXY1 529 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms