RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FTCDNL1E5RQL4 147 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ITGB2P05107 769 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 CDK2P24941 298 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 FRRS1Q6ZNA5 592 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 MRGPREQ86SM8 312 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 LIPHQ8WWY8 451 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 NANOS1Q8WY41 292 aaKnown RBP8.66□□□□□ -1.02
USP54-205ENST00000424265 ACY3Q96HD9 319 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 VSTM2LQ96N03 204 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 FOXN4Q96NZ1 517 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ARHGDIGQ99819 225 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 HSF4Q9ULV5 492 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 RNF222A6NCQ9 220 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 CD8AP01732 235 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 TAS2R20P59543 309 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ELOBQ15370 118 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 TMEM241Q24JQ0 296 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 KCTD18Q6PI47 426 aaPredicted RBP8.66□□□□□ -1.02
USP54-205ENST00000424265 LINC00696Q6ZRV3 163 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 LYG1Q8N1E2 194 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 BTF3L4Q96K17 158 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 SMIM8Q96KF7 97 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ATP6V0BQ99437 205 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ADGRL4Q9HBW9 690 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 UQCR10Q9UDW1 63 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 IKZF2Q9UKS7 526 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 SULT1A2P50226 295 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 DEFB109BQ30KR1 87 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 FAM46AQ96IP4 442 aaKnown RBP8.66□□□□□ -1.02
USP54-205ENST00000424265 SLC25A18Q9H1K4 315 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 VDAC3Q9Y277 283 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 SNRPNP63162 240 aaKnown RBP8.65□□□□□ -1.02
USP54-205ENST00000424265 SLC35E3Q7Z769 313 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 OR6N2Q8NGY6 317 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 NRTNQ99748 197 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 SLC2A8Q9NY64 477 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 OR5AC2Q9NZP5 309 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 IGLV3-12A0A075B6K2 115 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 MRPL3P09001 348 aaKnown RBP8.65□□□□□ -1.02
USP54-205ENST00000424265 LIMS3P0CW19 117 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 LIMS4P0CW20 117 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 DSCR4P56555 118 aaPredicted RBP8.65□□□□□ -1.02
USP54-205ENST00000424265 MARCH3Q86UD3 253 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 ARIH2OSQ8N7S6 290 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 TMEM104Q8NE00 496 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 OR6K6Q8NGW6 343 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 SARAFQ96BY9 339 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 CKLFQ9UBR5 152 aa8.65□□□□□ -1.02
USP54-205ENST00000424265 CDHR4A6H8M9 788 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 FAM166BA8MTA8 275 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CXCL1P09341 107 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CT45A8P0DMV1 189 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CT45A9P0DMV2 189 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 RAB9AP51151 201 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 EIF2B1Q14232 305 aaKnown RBP8.65□□□□□ -1.03
USP54-205ENST00000424265 MMDQ15546 238 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CT45A2Q5DJT8 189 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 GDF7Q7Z4P5 450 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 ZNF584Q8IVC4 421 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 APOBEC4Q8WW27 367 aaKnown RBP8.65□□□□□ -1.03
USP54-205ENST00000424265 ANGPTL4Q9BY76 406 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 DVL2O14641 736 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CNIH1O95406 144 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 OR2T7P0C7T2 308 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 CTXN1P60606 82 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 LEG1Q6P5S2 330 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 DPPA3Q6W0C5 159 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 SIRT6Q8N6T7 355 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 PTPMT1Q8WUK0 201 aaPredicted RBP8.65□□□□□ -1.03
USP54-205ENST00000424265 NRIP3Q9NQ35 241 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 SIDT1Q9NXL6 827 aaKnown RBP8.65□□□□□ -1.03
USP54-205ENST00000424265 V9GY05 133 aa8.65□□□□□ -1.03
USP54-205ENST00000424265 SHISA3A0PJX4 238 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 OR5H8P0DN80 308 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 MDKP21741 143 aaPredicted RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 EMDP50402 254 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 CLDN18P56856 261 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 PLP2Q04941 152 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 OR6T1Q8NGN1 323 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 BOD1Q96IK1 185 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 COL25A1Q9BXS0 654 aaPredicted RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 COX11Q9Y6N1 276 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 B4DEV8 164 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 J3QR89 54 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 GZMMP51124 257 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 PCBP3P57721 371 aaKnown RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 VN1R17PQ8TDU5 208 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 LAMTOR2Q9Y2Q5 125 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 ZNF736B4DX44 427 aaPredicted RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 TAS2R31P59538 309 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 TGFBR3Q03167 851 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 CFHR1Q03591 330 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 DHRS2Q13268 280 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 SLC36A1Q7Z2H8 476 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 HMGN2P46Q86SG4 172 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 LYG2Q86SG7 212 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 ZNF101Q8IZC7 436 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 OR4B1Q8NGF8 309 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 MIB2Q96AX9 1013 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 TTTY10Q9BZA0 68 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms