RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SH2D7A6NKC9 451 aaPredicted RBP9.3□□□□□ -0.92
USP4-204ENST00000416417 SAC3D1A6NKF1 404 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 DHRS7CA6NNS2 312 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 SIRPB1O00241 398 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 F2RL2O00254 374 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 PRKACAP17612 351 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 HTR1FP30939 366 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 ATP6V1E1P36543 226 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 FUT6P51993 359 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 OR12D2P58182 307 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 KPRPQ5T749 579 aaPredicted RBP9.3□□□□□ -0.92
USP4-204ENST00000416417 PRAMEF5Q5TYX0 476 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 LIAT1Q6ZQX7 453 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 Q8N2B8 174 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 EME1Q96AY2 570 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 FOXRED1Q96CU9 486 aaPredicted RBP9.3□□□□□ -0.92
USP4-204ENST00000416417 SPACA5Q96QH8 159 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 PRSS22Q9GZN4 317 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 CHST5Q9GZS9 411 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 WARS2Q9UGM6 360 aaKnown RBP9.3□□□□□ -0.92
USP4-204ENST00000416417 hADV38S2A0JD32 116 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 PEX14O75381 377 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 OR2T7P0C7T2 308 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 FASP25445 335 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 GDNFP39905 211 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 ZNF91Q05481 1191 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 UTF1Q5T230 341 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 TRAPPC6BQ86SZ2 158 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 ZDHHC13Q8IUH4 622 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 OR10AC1Q8NH08 325 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 MRAPQ8TCY5 172 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 WIPF2Q8TF74 440 aaPredicted RBP9.29□□□□□ -0.92
USP4-204ENST00000416417 SGCDQ92629 289 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 FGGYQ96C11 551 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 WNT10AQ9GZT5 417 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 GABARAPL1Q9H0R8 117 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 AP4S1Q9Y587 144 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 SESN1Q9Y6P5 492 aa9.29□□□□□ -0.92
USP4-204ENST00000416417 IGKV1-12A0A0C4DH73 117 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 PLXNB1O43157 2135 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 ENTPD6O75354 484 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 GATBO75879 557 aaKnown RBP9.28□□□□□ -0.92
USP4-204ENST00000416417 IGKV1D-12P01611 117 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 PEX2P28328 305 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 VDAC2P45880 294 aaPredicted RBP9.28□□□□□ -0.92
USP4-204ENST00000416417 OR3A1P47881 315 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 MTCP1P56278 107 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 MEF2CQ06413 473 aaPredicted RBP9.28□□□□□ -0.92
USP4-204ENST00000416417 SCN1BQ07699 218 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 NDUFA11Q86Y39 141 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 FAM58AQ8N1B3 248 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 OR5D18Q8NGL1 313 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 TMEM133Q9H2Q1 129 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 AURKAIP1Q9NWT8 199 aaPredicted RBP9.28□□□□□ -0.92
USP4-204ENST00000416417 AASSQ9UDR5 926 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 OAZ3Q9UMX2 235 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 GSTK1Q9Y2Q3 226 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 LINC00312Q9Y6C7 94 aa9.28□□□□□ -0.92
USP4-204ENST00000416417 PIN1P1O15428 100 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 SERPINA3P01011 423 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 RBP4P02753 201 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 IGLL1P15814 213 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 ATF1P18846 271 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 AZGP1P25311 298 aaKnown RBP9.27□□□□□ -0.93
USP4-204ENST00000416417 GLIPR1P48060 266 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 RBP2P50120 134 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 ATP1B3P54709 279 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 NANOS3P60323 173 aaKnown RBP9.27□□□□□ -0.93
USP4-204ENST00000416417 ISL1P61371 349 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 C1orf146Q5VVC0 180 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 C10orf99Q6UWK7 81 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 OR51A4Q8NGJ6 313 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 OR4P4Q8NGL7 312 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 OR2G2Q8NGZ5 317 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 PHF21AQ96BD5 680 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 OCSTAMPQ9BR26 566 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 CLEC7AQ9BXN2 247 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 FRRS1LQ9P0K9 344 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 PITPNC1Q9UKF7 332 aa9.27□□□□□ -0.93
USP4-204ENST00000416417 TRBV2A0A0J9YWF9 115 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 SULT1C4O75897 302 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR2H2O95918 312 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 ZNF20P17024 532 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 CDK2P24941 298 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 P2RX3P56373 397 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 EMX1Q04741 257 aaPredicted RBP9.26□□□□□ -0.93
USP4-204ENST00000416417 AESQ08117 197 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 BNIP1Q12981 228 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 TCTEX1D4Q5JR98 221 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 CCDC121Q6ZUS5 278 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 FAM220AQ7Z4H9 259 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 ABHD12Q8N2K0 398 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR5AU1Q8NGC0 362 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 GABARAPL3Q9BY60 117 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 FAM90A22PA8MWA6 464 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 MGST3O14880 152 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 XPNPEP2O43895 674 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 LPLP06858 475 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 UBCP0CG48 685 aaKnown RBP9.26□□□□□ -0.93
USP4-204ENST00000416417 HTR1DP28221 377 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms