RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 FLI1Q01543 452 aaPredicted RBP8.49□□□□□ -1.05
MSH2-202ENST00000406134 FOXRED2Q8IWF2 684 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 CCDC54Q8NEL0 328 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 OR4D5Q8NGN0 318 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 CPT1CQ8TCG5 803 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 MR1Q95460 341 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 TP53RKQ96S44 253 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 PARP11Q9NR21 331 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 CACFD1Q9UGQ2 172 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 RCL1Q9Y2P8 373 aaKnown RBP8.49□□□□□ -1.05
MSH2-202ENST00000406134 STARD10Q9Y365 291 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 DNPH1O43598 174 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 CST4P01036 141 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 SFTA3P0C7M3 94 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 SRD5A2P31213 254 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 FCGR2CP31995 323 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 FHITP49789 147 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 RGS19P49795 217 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 PDZK1IP1Q13113 114 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 ALKBH2Q6NS38 261 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 CCDC36Q8IYA8 594 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 UBAC2Q8NBM4 344 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 NAT6Q93015 286 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 NAA11Q9BSU3 229 aaPredicted RBP8.49□□□□□ -1.05
MSH2-202ENST00000406134 RSRP1Q9BUV0 290 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 SH3BGRL3Q9H299 93 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 SLC2A9Q9NRM0 540 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 TAAR5O14804 337 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 S100A6P06703 90 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 ECI1P42126 302 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 TIPARPQ7Z3E1 657 aaKnown RBP8.49□□□□□ -1.05
MSH2-202ENST00000406134 ABHD3Q8WU67 409 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 HLA-CQ95604 372 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 MOB3AQ96BX8 217 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 METTL9Q9H1A3 318 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 EDARQ9UNE0 448 aa8.49□□□□□ -1.05
MSH2-202ENST00000406134 NDUFS6O75380 124 aaKnown RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 MED6O75586 246 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 NR2C1P13056 603 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 FOXG1P55316 489 aaPredicted RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 HERPUD1Q15011 391 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 WDR5BQ86VZ2 330 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 FBXL14Q8N1E6 418 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 TMEM105Q8N8V8 129 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 OR10D3Q8NH80 312 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 RXFP4Q8TDU9 374 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 C1QTNF5Q9BXJ0 243 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 RNF122Q9H9V4 155 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 GPR35Q9HC97 309 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 C14orf166Q9Y224 244 aaKnown RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 PTPRBP23467 1997 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 RNASEK-C17orf49H0YIS7 233 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 CXCL13O43927 109 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 FBXO24O75426 580 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 NRASP01111 189 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 SPP1P10451 314 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 RBM11P57052 281 aaKnown RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 WIPI1Q5MNZ9 446 aaPredicted RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 RTL6Q6ICC9 239 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 SLC22A25Q6T423 547 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 LHFPL2Q6ZUX7 228 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 BATF2Q8N1L9 274 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 GINS3Q9BRX5 216 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 EGLN1Q9GZT9 426 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 ELL3Q9HB65 397 aaPredicted RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 NECAP2Q9NVZ3 263 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 IL36RNQ9UBH0 155 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 ZNF407Q9C0G0 2248 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 NSG1A0A0A6YYJ2 146 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 CCDC163A0A0D9SF12 145 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 A0A1W2PNU3 283 aaPredicted RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 C3orf80F5H4A9 247 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 CYTIPO60759 359 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 FARS2O95363 451 aaKnown RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 RFC3P40938 356 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 RBP2P50120 134 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 CEACAM16Q2WEN9 425 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 FNDC9Q8TBE3 224 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 PLPPR1Q8TBJ4 325 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 CPNE2Q96FN4 548 aaPredicted RBP8.48□□□□□ -1.05
MSH2-202ENST00000406134 FOXB1Q99853 325 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 SMIM3Q9BZL3 60 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 P4HTMQ9NXG6 502 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 COA4Q9NYJ1 87 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 TIMM10BQ9Y5J6 103 aa8.48□□□□□ -1.05
MSH2-202ENST00000406134 PET100P0DJ07 73 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 GLI4P10075 376 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 RSU1Q15404 277 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 LIAT1Q6ZQX7 453 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 MED12LQ86YW9 2145 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 SGPP2Q8IWX5 399 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 OSR2Q8N2R0 312 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 NAXEQ8NCW5 288 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 CMSS1Q9BQ75 279 aaKnown RBP8.47□□□□□ -1.05
MSH2-202ENST00000406134 SPRY4Q9C004 299 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 PARP12Q9H0J9 701 aaKnown RBP8.47□□□□□ -1.05
MSH2-202ENST00000406134 IGKV1-6A0A0C4DH72 117 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 CCDC85CA6NKD9 419 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 XRCC2O43543 280 aa8.47□□□□□ -1.05
MSH2-202ENST00000406134 DIRAS3O95661 229 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms