RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DEFB108AA8MXU0 73 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 PGA4P0DJD7 388 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 PGA5P0DJD9 388 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 NMUP48645 174 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 JMJD6Q6NYC1 403 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-202ENST00000394243 SLC35E3Q7Z769 313 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 C5orf17Q8NAS9 161 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 CRXO43186 299 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-202ENST00000394243 DHHO43323 396 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 FAM3BP58499 235 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-202ENST00000394243 PAFAH1B2P68402 229 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 NKAIN1Q4KMZ8 207 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 MRGPRGQ86SM5 289 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 TBC1D26Q86UD7 250 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 OR13H1Q8NG92 308 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 FGF22Q9HCT0 170 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 CLEC5AQ9NY25 188 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 HMGA2P52926 109 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 RCC2Q9P258 522 aaKnown RBP10.55□□□□□ -0.72
SYNPO-202ENST00000394243 UFC1Q9Y3C8 167 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 A0A0B4J2E0 115 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 A0A1B0GX12 115 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 FABP2P12104 132 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 BRS3P32247 399 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 CEBPDP49716 269 aaPredicted RBP10.55□□□□□ -0.72
SYNPO-202ENST00000394243 CA3P07451 260 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 MRPS21P82921 87 aaKnown RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 FMODQ06828 376 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 PATE1Q8WXA2 126 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 MRGPRX4Q96LA9 322 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 CBLN4Q9NTU7 201 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 OR2T8A6NH00 312 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 CTSDP07339 412 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 PGFP49763 221 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TGIF2LYQ8IUE0 185 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 BAHD1Q8TBE0 780 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TNFSF18Q9UNG2 199 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 ACTL6AO96019 429 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 RRADP55042 308 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF345Q14585 488 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 SMIM21Q3B7S5 101 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 LRRC75AQ8NAA5 344 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM56Q96MV1 263 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 OCIAD1Q9NX40 245 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 LRP6O75581 1613 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 EWSR1Q01844 656 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 ALKBH6Q3KRA9 238 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 DMKNQ6E0U4 476 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 RPS4Y2Q8TD47 263 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM167BQ9NRX6 74 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF275Q9NSD4 429 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 SLC22A20A6NK97 555 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 CXCL13O43927 109 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 UBE2L3P68036 154 aaKnown RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 RBPJQ06330 500 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 CD300LDQ6UXZ3 194 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 REC114Q7Z4M0 266 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 OR1P1Q8NH06 330 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 ATOH1Q92858 354 aaPredicted RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 PECRQ9BY49 303 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 PDE6DO43924 150 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 SRSF10O75494 262 aaKnown RBP10.54□□□□□ -0.72
SYNPO-202ENST00000394243 SOD3P08294 240 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 HERVK_113P61574 105 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TTC32Q5I0X7 151 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 KHDC1LQ5JSQ8 128 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 CYB561D1Q8N8Q1 229 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 OR1F12Q8NHA8 337 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 TAAR3PQ9P1P4 343 aa10.54□□□□□ -0.72
SYNPO-202ENST00000394243 MEX3AA1L020 520 aaKnown RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 FGF2P09038 288 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ORM2P19652 201 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 PSG5Q15238 335 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 IGFBP7Q16270 282 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 THSD4Q6ZMP0 1018 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM178AQ8NBL3 297 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 NPY1RP25929 384 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 CDKN2AP42771 156 aaKnown RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 FOXF1Q12946 379 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 HMGCLL1Q8TB92 370 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 MRPL24Q96A35 216 aaKnown RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 RAB37Q96AX2 223 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 MRPL37Q9BZE1 423 aaKnown RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 NGFP01138 241 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ST6GAL1P15907 406 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 LDLRAD3Q86YD5 345 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 OR4P4Q8NGL7 312 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 HSD17B10Q99714 261 aaKnown RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 RSG1Q9BU20 258 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 GGACTQ9BVM4 153 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 MMP25Q9NPA2 562 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 PSG11Q9UQ72 335 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF256Q9Y2P7 627 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 FRG2CA6NGY1 282 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 RER1O15258 196 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ST8SIA5O15466 376 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 DHRS3O75911 302 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 P01737 135 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 GNG10P50151 68 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 PNLIPRP2P54317 469 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms