RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RPL27P61353 136 aaKnown RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 PCOLCEQ15113 449 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 IAH1Q2TAA2 248 aaPredicted RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 CPEB2Q7Z5Q1 589 aaKnown RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 FOXRED2Q8IWF2 684 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 ZNF519Q8TB69 540 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 ERGIC1Q969X5 290 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 R3HDM4Q96D70 268 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 NDUFAF3Q9BU61 184 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 SMIM3Q9BZL3 60 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 RTN4RQ9BZR6 473 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 G6PC2Q9NQR9 355 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 C1orf123Q9NWV4 160 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 OSGIN2Q9Y236 505 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 ANKRD11Q6UB99 2663 aaPredicted RBP9.74□□□□□ -0.85
CUX1-204ENST00000393824 ACACAQ13085 2346 aa9.74□□□□□ -0.85
CUX1-204ENST00000393824 CDRT15L2A8MXV6 281 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 C9J4A7 227 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 H3BQ15 152 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 IGHMP01871 453 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TRGC2P03986 189 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 SPARCP09486 303 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 COX6A1P12074 109 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 FABP4P15090 132 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 GNALP38405 381 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 ERVFRD-1P60508 538 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 JOSD1Q15040 202 aaPredicted RBP9.73□□□□□ -0.85
CUX1-204ENST00000393824 CD226Q15762 336 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 SGCBQ16585 318 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 DEGS2Q6QHC5 323 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 SLC22A25Q6T423 547 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TMPRSS7Q7RTY8 843 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 SLC22A24Q8N4F4 322 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OR52N5Q8NH56 324 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 METTL21AQ8WXB1 218 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 EMG1Q92979 244 aaKnown RBP9.73□□□□□ -0.85
CUX1-204ENST00000393824 RAB39BQ96DA2 213 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 KLHDC3Q9BQ90 382 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OR11A1Q9GZK7 315 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 NELFAQ9H3P2 528 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 GOLT1BQ9Y3E0 138 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 MPDZO75970 2070 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 ZNF727A8MUV8 499 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TMEM11P17152 192 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 GLRA1P23415 457 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TAGLN2P37802 199 aaKnown RBP9.73□□□□□ -0.85
CUX1-204ENST00000393824 ZNF117Q03924 483 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 PCK2Q16822 640 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 ATP1A1-AS1Q5TC04 95 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TMEM164Q5U3C3 297 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OTPQ5XKR4 325 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OR2T2Q6IF00 324 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 ZNF343Q6P1L6 599 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 PPP1R32Q7Z5V6 425 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OR13G1Q8NGZ3 307 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 ABHD5Q8WTS1 349 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 DAZLQ92904 295 aaKnown RBP9.73□□□□□ -0.85
CUX1-204ENST00000393824 PACRGQ96M98 296 aaPredicted RBP9.73□□□□□ -0.85
CUX1-204ENST00000393824 WWTR1Q9GZV5 400 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 TXNIPQ9H3M7 391 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 OR52A1Q9UKL2 312 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 SLC5A6Q9Y289 635 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 EMC9Q9Y3B6 208 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 MED13Q9UHV7 2174 aa9.73□□□□□ -0.85
CUX1-204ENST00000393824 CACNA1GO43497 2377 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 IGHV1-45A0A0A0MS14 117 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 DVL1O14640 695 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 TGOLN2O43493 480 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 LMX1BO60663 402 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 WT1P19544 449 aaPredicted RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 FGF7P21781 194 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 OTX2P32243 289 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 CCR4P51679 360 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 Q0VFX4 171 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 PDZD11Q5EBL8 140 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 AKR1C8PQ5T2L2 129 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 DTX1Q86Y01 620 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 TMEM104Q8NE00 496 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 OR52N4Q8NGI2 321 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 OR5H2Q8NGV7 314 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 MFSD8Q8NHS3 518 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 RNASEH2CQ8TDP1 164 aaKnown RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 BSCL2Q96G97 398 aaPredicted RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 ATG101Q9BSB4 218 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 LPAR5Q9H1C0 372 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 LOC102723996A0A087X1L8 192 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 SMCO3A2RU48 225 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 E5RGE8 158 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 UTS2O95399 124 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 PRH1P02810 166 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 LINC00614P0C842 121 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 TRGC1P0CF51 173 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 HIST1H1DP16402 221 aaKnown RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 ZNF25P17030 456 aaPredicted RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 APOBEC1P41238 236 aaKnown RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 GLIPR1P48060 266 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 GLO1Q04760 184 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 GGNBP1Q5YKI7 109 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 MARCH3Q86UD3 253 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 RTN4RL2Q86UN3 420 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms