RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 MMP26Q9NRE1 261 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NCOA6Q14686 2063 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ADGRG4Q8IZF6 3080 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF736B4DX44 427 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 F8VVB4 439 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 F8VWA3 439 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 RAB27BO00194 218 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 CYTIPO60759 359 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 VSIG8P0DPA2 414 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 HLA-GP17693 338 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 AGAP20933 346 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 CEACAM8P31997 349 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NAAAQ02083 359 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 UNC119Q13432 240 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 SMCO1Q147U7 214 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NKAPLQ5M9Q1 402 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 RBMS3Q6XE24 437 aaKnown RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF584Q8IVC4 421 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ACBD4Q8NC06 268 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NABP1Q96AH0 204 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 TLNRD1Q9H1K6 362 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 DCAF16Q9NXF7 216 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 UTP20O75691 2785 aaKnown RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 TMEM235A6NFC5 223 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 FAM90A27PA6NNH2 459 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF716A6NP11 495 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 TMEM14DPA8MWL7 114 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 TNFSF13O75888 250 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 SLC2A1P11166 492 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 RCC1P18754 421 aaPredicted RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 KIR2DL2P43627 348 aaPredicted RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 HIST1H3AP68431 136 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 MEF2DQ14814 521 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 HIST2H3PS2Q5TEC6 136 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 AWAT2Q6E213 333 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 ABLIM2Q6H8Q1 611 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 TMEM211Q6ICI0 200 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 C11orf88Q6PI97 169 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 HIST2H3AQ71DI3 136 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 FAM57BQ71RH2 274 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 NUFIP2Q7Z417 695 aaKnown RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 MRGPRGQ86SM5 289 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 ANGPTL5Q86XS5 388 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 C20orf196Q8IYI0 205 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 VRK1Q99986 396 aaPredicted RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 SMCO4Q9NRQ5 59 aa12.36□□□□□ -0.43
HMGA1-203ENST00000374116 SPTBN1Q01082 2364 aaKnown RBP12.36□□□□□ -0.43
HMGA1-203ENST00000374116 NKX2-6A6NCS4 301 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 DHHO43323 396 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 IGHV3-9P01782 118 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 IGHV2-5P01817 119 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 AMY2AP04746 511 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 CHRM2P08172 466 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 FCGR2AP12318 317 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ENDOGQ14249 297 aaKnown RBP12.35□□□□□ -0.43
HMGA1-203ENST00000374116 PNLIPRP3Q17RR3 467 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 DRAM2Q6UX65 266 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 OR5AS1Q8N127 324 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF561Q8N587 486 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF75AQ96N20 296 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ADAT1Q9BUB4 502 aaKnown RBP12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF471Q9BX82 626 aaPredicted RBP12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ZMAT3Q9HA38 289 aaKnown RBP12.35□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF319Q9P2F9 582 aa12.35□□□□□ -0.43
HMGA1-203ENST00000374116 OR5H14A6NHG9 310 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 M0QYG6 137 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF735P0CB33 412 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 MPZP25189 248 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF84P51523 738 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 FAM189A2Q15884 450 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 NKPD1Q17RQ9 610 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 RIPPLY2Q5TAB7 128 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 TRAPPC6BQ86SZ2 158 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 ZFP82Q8N141 532 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 BPIFB2Q8N4F0 458 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 CHST4Q8NCG5 386 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 SLC30A7Q8NEW0 376 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 OR10R2Q8NGX6 335 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 ITLN2Q8WWU7 325 aaPredicted RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 PGAM5Q96HS1 289 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 FAM71F1Q96KD3 344 aaPredicted RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 OPN3Q9H1Y3 402 aaPredicted RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 UQCC1Q9NVA1 299 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 TREM2Q9NZC2 230 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 MRPS28Q9Y2Q9 187 aaKnown RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 FLVCR1Q9Y5Y0 555 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 A0A0U1RQV5 110 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 WIPF3A6NGB9 483 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 EEF1E1-BLOC1S5C9J1V9 151 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 IGLV3-1P01715 115 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 PJVKQ0ZLH3 352 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 RNPS1Q15287 305 aaKnown RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 C4orf46Q504U0 113 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 FAM214BQ7L5A3 538 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF101Q8IZC7 436 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 CCDC54Q8NEL0 328 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 OR4A4PQ8NGN8 299 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 OR14K1Q8NGZ2 314 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 STARD4Q96DR4 205 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 GMPPAQ96IJ6 420 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms