RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR52N4Q8NGI2 321 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF649Q9BS31 505 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 AMBNQ9NP70 447 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 FAM118AQ9NWS6 357 aa17.62■□□□□ 0.41
CCDC28B-201ENST00000373602 FAM90A8PA6NJQ4 464 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 TIMM23O14925 209 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 FADS2O95864 444 aaKnown RBP17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 MT-ND2P03891 347 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 PAX6P26367 422 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 RAB40BQ12829 278 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF146Q15072 292 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 SLC35E4Q6ICL7 350 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 TCF23Q7RTU1 214 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF676Q8N7Q3 588 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 OR13C3Q8NGS6 347 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 ISG20L2Q9H9L3 353 aaKnown RBP17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 INPP5EQ9NRR6 644 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 ERVK13-1Q9NX77 482 aa17.61■□□□□ 0.41
CCDC28B-201ENST00000373602 DSCAML1Q8TD84 2053 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 hADV38S2A0JD32 116 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 PSPNO60542 156 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 PEX2P28328 305 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 EDDM3AQ14507 147 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 GRK1Q15835 563 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 LY6EQ16553 131 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 SPIN3Q5JUX0 258 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 ASPHD2Q6ICH7 369 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 CRIP3Q6Q6R5 217 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 OR13C9Q8NGT0 318 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 OR13D1Q8NGV5 346 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 ZNF714Q96N38 554 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 HMG20AQ9NP66 347 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 MRPS18AQ9NVS2 196 aaKnown RBP17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 FBLN5Q9UBX5 448 aa17.6■□□□□ 0.41
CCDC28B-201ENST00000373602 PKD1L1Q8TDX9 2849 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 IGKV1-12A0A0C4DH73 117 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 MEX3AA1L020 520 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 ODF3BA8MYP8 253 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 M0QZ24 198 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 WIPF1O43516 503 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 IGKV1D-12P01611 117 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 RPSAP08865 295 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 OCM2P0CE71 109 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 OCMP0CE72 109 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 IGHV1-8P0DP01 117 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 PRKACAP17612 351 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 GABRR1P24046 479 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 DUSP1P28562 367 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 MRPL28Q13084 256 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 RNF144BQ7Z419 303 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 LHFPL4Q7Z7J7 247 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 OR11H6Q8NGC7 330 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 PIFOQ8TCI5 191 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 APH1BQ8WW43 257 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 RFT1Q96AA3 541 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 CHST6Q9GZX3 395 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 ZCCHC4Q9H5U6 513 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 TCF7L1Q9HCS4 588 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 GLS2Q9UI32 602 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 RPL36Q9Y3U8 105 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 TBL2Q9Y4P3 447 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 LINC00312Q9Y6C7 94 aa17.59■□□□□ 0.41
CCDC28B-201ENST00000373602 VGLL3A8MV65 326 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 KDM4BO94953 1096 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 ALX3O95076 343 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 CALCBP10092 127 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 ZNF626Q68DY1 528 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 DYNAPQ8N1N2 210 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 TPRX1Q8N7U7 411 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 OR4S1Q8NGB4 309 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 OR52I1Q8NGK6 324 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 PPP1R35Q8TAP8 253 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 SPACA5Q96QH8 159 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 RAB18Q9NP72 206 aa17.58■□□□□ 0.4
CCDC28B-201ENST00000373602 TMEM212A6NML5 194 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 E9PI62 339 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 MGST3O14880 152 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 ZFPL1O95159 310 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 ARG1P05089 322 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 ERP29P30040 261 aaKnown RBP17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 GABRA5P31644 462 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 OR3A1P47881 315 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 SNU13P55769 128 aaKnown RBP17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 KLHL22Q53GT1 634 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 LIAT1Q6ZQX7 453 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 SAXO1Q8IYX7 474 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 FOXRED1Q96CU9 486 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 RHOFQ9HBH0 211 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 NEK6Q9HC98 313 aa17.57■□□□□ 0.4
CCDC28B-201ENST00000373602 SH2D1BO14796 132 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 BAG2O95816 211 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 CCDC159P0C7I6 412 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 KIR2DS4P43632 304 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 LDLRAD2Q5SZI1 272 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 LPCAT4Q643R3 524 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 SERPINA12Q8IW75 414 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 PARP16Q8N5Y8 322 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 OR5D18Q8NGL1 313 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 OR5AK2Q8NH90 309 aa17.56■□□□□ 0.4
CCDC28B-201ENST00000373602 HAVCR2Q8TDQ0 301 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms