RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MTCH2Q9Y6C9 303 aa5.92□□□□□ -1.46
VPS39-202ENST00000348544 ADAMTS9Q9P2N4 1935 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 A0A1W2PQD3 144 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 BLACEA4D250 179 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 NKX2-6A6NCS4 301 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 MARCH11A6NNE9 402 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 B4DEV8 164 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 RER1O15258 196 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 CA11O75493 328 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 CYB5R3P00387 301 aaPredicted RBP5.91□□□□□ -1.46
VPS39-202ENST00000348544 JMJD7P0C870 316 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 PGA3P0DJD8 388 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 AKT2P31751 481 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 GALNSP34059 522 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 BIDP55957 195 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 RAB11AP62491 216 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TFF2Q03403 129 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ZNF266Q14584 549 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 FAM189A2Q15884 450 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TANGO2Q6ICL3 276 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 OOSP2Q86WS3 158 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 OR5C1Q8NGR4 320 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ADAMTS18Q8TE60 1221 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 DYRK2Q92630 601 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 HAS2Q92819 552 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 LYZL4Q96KX0 146 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TP53RKQ96S44 253 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 MOB1AQ9H8S9 216 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 CBLN4Q9NTU7 201 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TMEM242Q9NWH2 141 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 PIAS3Q9Y6X2 628 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 LRP4O75096 1905 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 SHANK1Q9Y566 2161 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 FAM221BA6H8Z2 402 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ZNF732B4DXR9 585 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TMEM50AO95807 157 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 MMP9P14780 707 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 FOLR1P15328 257 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 DYNLT3P51808 116 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 PLCXD2Q0VAA5 305 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 RUNX3Q13761 415 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 TAF9Q16594 264 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ABCA11PQ4W5N1 156 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ZNF542PQ5EBM4 170 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 COA6Q5JTJ3 125 aaKnown RBP5.91□□□□□ -1.46
VPS39-202ENST00000348544 TMEM31Q5JXX7 168 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 WDR25Q64LD2 544 aaPredicted RBP5.91□□□□□ -1.46
VPS39-202ENST00000348544 TEX38Q6PEX7 206 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 H1FNTQ75WM6 255 aaPredicted RBP5.91□□□□□ -1.46
VPS39-202ENST00000348544 RTL10Q7L3V2 364 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 SLC16A14Q7RTX9 510 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 GPR137CQ8N3F9 429 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 NOXO1Q8NFA2 376 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 OR10G4Q8NGN3 311 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 SPPL3Q8TCT6 385 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 ADGRG7Q96K78 797 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 FAAP24Q9BTP7 215 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 CABLES2Q9BTV7 478 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 MRPL13Q9BYD1 178 aaKnown RBP5.91□□□□□ -1.46
VPS39-202ENST00000348544 MAGT1Q9H0U3 335 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 PLEKHJ1Q9NW61 149 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 MMACHCQ9Y4U1 282 aa5.91□□□□□ -1.46
VPS39-202ENST00000348544 RTTNQ86VV8 2226 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 KNL1Q8NG31 2342 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 SHISA7A6NL88 538 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 ZNF850A8MQ14 1090 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 TGOLN2O43493 480 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 CST7O76096 145 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 FCGR2AP12318 317 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 ZNF25P17030 456 aaPredicted RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 COL9A1P20849 921 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 TDGF1P3P51864 188 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 H3F3AP84243 136 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 TLE3Q04726 772 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 GNMTQ14749 295 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 RSPO4Q2I0M5 234 aaPredicted RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 MEX3BQ6ZN04 569 aaKnown RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 DOK3Q7L591 496 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 LGI3Q8N145 548 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 TMEM252Q8N6L7 170 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 OR10A7Q8NGE5 316 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 PIGTQ969N2 578 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 RBMXL1Q96E39 390 aaKnown RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 THOC3Q96J01 351 aaKnown RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 Q96M66 194 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 DEFB118Q96PH6 123 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 HIPK2Q9H2X6 1198 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 ELL3Q9HB65 397 aaPredicted RBP5.9□□□□□ -1.46
VPS39-202ENST00000348544 SDF2L1Q9HCN8 221 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 CHST11Q9NPF2 352 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 GNG13Q9P2W3 67 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 B3GAT1Q9P2W7 334 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 DKKL1Q9UK85 242 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 POLR1DQ9Y2S0 133 aa5.9□□□□□ -1.46
VPS39-202ENST00000348544 XKRY2A2RUG3 117 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 NPIPB13A6NJU9 1138 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 SHISA8B8ZZ34 492 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 NPIPB4C9JG80 1138 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 SLC33A1O00400 549 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 PHF1O43189 567 aaPredicted RBP5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 259.4 ms