RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 TMEM251Q8N6I4 163 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 SLC30A7Q8NEW0 376 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 OR5T2Q8NGG2 359 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 SLAMF9Q96A28 289 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 TMEM45BQ96B21 275 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 AQP10Q96PS8 301 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 DNTTIP1Q9H147 329 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 OR51B6Q9H340 312 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 PDCD6O75340 191 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF883P0CG24 379 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF708P17019 499 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ECI1P42126 302 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 GPM6AP51674 278 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 RBM11P57052 281 aaKnown RBP12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 TAGLNQ01995 201 aaKnown RBP12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 RPL7L1Q6DKI1 246 aaKnown RBP12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ASCL4Q6XD76 172 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 Q6ZPA2 131 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 OR11L1Q8NGX0 322 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 SMIM3Q9BZL3 60 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ABI3Q9P2A4 366 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 SHANK1Q9Y566 2161 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 CD59P13987 128 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 IL15RAQ13261 267 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 RTN4IP1Q8WWV3 396 aaPredicted RBP12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 SLC5A7Q9GZV3 580 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 PRDM14Q9GZV8 571 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 PIGMQ9H3S5 423 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF286AQ9HBT8 521 aa12.85□□□□□ -0.35
VIPAS39-202ENST00000343765 IGKV3D-15A0A087WSY6 115 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF705EA8MWA4 302 aaPredicted RBP12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 IFNA21P01568 189 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 LYL1P12980 280 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 HAAOP46952 286 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 ATP1A1-AS1Q5TC04 95 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 CLEC9AQ6UXN8 241 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 TFAP2EQ6VUC0 442 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 HS3ST6Q96QI5 342 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 TMEM231Q9H6L2 316 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 C12orf49Q9H741 205 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 IL36RNQ9UBH0 155 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 MGAQ8IWI9 3026 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 BCL3P20749 454 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 NOVA1P51513 510 aaKnown RBP12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 SRSF3P84103 164 aaKnown RBP12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 PRDX4Q13162 271 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 NSUN5P2Q63ZY6 315 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 MRPL21Q7Z2W9 205 aaKnown RBP12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 CCDC36Q8IYA8 594 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 RNF141Q8WVD5 230 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 WNT2BQ93097 391 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 CNTNAP3BQ96NU0 1288 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 CNTNAP3Q9BZ76 1288 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 FGF23Q9GZV9 251 aaPredicted RBP12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 C12orf4Q9NQ89 552 aa12.84□□□□□ -0.35
VIPAS39-202ENST00000343765 M0R296 226 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 ACTL6AO96019 429 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 MT-CO3P00414 261 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 NGFP01138 241 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 HKR1P10072 659 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 DHRS11Q6UWP2 260 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 LYZL2Q7Z4W2 148 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 SPSB4Q96A44 273 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 NAA60Q9H7X0 242 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 SLC2A9Q9NRM0 540 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 KCNIP3Q9Y2W7 256 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 R4GN57 208 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 DCHS1Q96JQ0 3298 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 SPTBN2O15020 2390 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 C3orf80F5H4A9 247 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 K7EPK0 472 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 FGF16O43320 207 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 DIRAS3O95661 229 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 DUSP1P28562 367 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 NAAAQ02083 359 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 SPEM2Q0P670 501 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 SMCO1Q147U7 214 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 DAZAP2Q15038 168 aaPredicted RBP12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 IGSF11Q5DX21 431 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 VASH2Q86V25 355 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 FAM71E2Q8N5Q1 922 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 APH1AQ96BI3 265 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 GPR87Q9BY21 358 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 HRH4Q9H3N8 390 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 LDAHQ9H6V9 325 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 LIPGQ9Y5X9 500 aa12.83□□□□□ -0.36
VIPAS39-202ENST00000343765 CDX4O14627 284 aaPredicted RBP12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 LRP3O75074 770 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 FBXO24O75426 580 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 TNFSF15O95150 251 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 FUT3P21217 361 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 AADACP22760 399 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 RPL12P30050 165 aaKnown RBP12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 ZNF273Q14593 569 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 NUFIP2Q7Z417 695 aaKnown RBP12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 DECR2Q9NUI1 292 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 IL36GQ9NZH8 169 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 STARD10Q9Y365 291 aa12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 MAP1BP46821 2468 aaKnown RBP12.82□□□□□ -0.36
VIPAS39-202ENST00000343765 PCNX2A6NKB5 2137 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms