RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SUCLG1P53597 346 aaKnown RBP19.46■□□□□ 0.71
TRIM28-202ENST00000341753 EWSR1Q01844 656 aaKnown RBP eCLIP19.46■□□□□ 0.712e-7■■■□□ 16.6
TRIM28-202ENST00000341753 GFI1BQ5VTD9 330 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 SLC22A25Q6T423 547 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 SPNS3Q6ZMD2 512 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 HIST2H3AQ71DI3 136 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 OR6X1Q8NH79 312 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 CHST5Q9GZS9 411 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 METTL7AQ9H8H3 244 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 NECAP2Q9NVZ3 263 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 PISDQ9UG56 409 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 COL5A1P20908 1838 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-202ENST00000341753 WRBO00258 174 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 YKT6O15498 198 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 PNLIPP16233 465 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 AFF3P51826 1226 aaKnown RBP19.45■□□□□ 0.7
TRIM28-202ENST00000341753 RAB1AP62820 205 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 LIAT1Q6ZQX7 453 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 Q8WTZ3 238 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 NELFAQ9H3P2 528 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 LIPGQ9Y5X9 500 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 IGHV3-15A0A0B4J1V0 119 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 GATCO43716 136 aaKnown RBP19.45■□□□□ 0.7
TRIM28-202ENST00000341753 NXPH3O95157 252 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 DUSP1P28562 367 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 RSPO1Q2MKA7 263 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-202ENST00000341753 SNAI3Q3KNW1 292 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 GPR157Q5UAW9 335 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 C18orf12Q96KH6 178 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 RBFOX3A6NFN3 312 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF729A6NN14 1252 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-202ENST00000341753 GDF9O60383 454 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 RSU1Q15404 277 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 SHBQ15464 509 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 SLC35G3Q8N808 338 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 MAGT1Q9H0U3 335 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 DECR2Q9NUI1 292 aa19.45■□□□□ 0.7
TRIM28-202ENST00000341753 TGIF2-C20orf24A0A0A6YYL0 155 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 SLC34A2O95436 690 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 ATP6V0CP27449 155 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 S100A2P29034 98 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 SUMO3P55854 103 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-202ENST00000341753 PIGYQ3MUY2 71 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 OR10D4PQ8NGN7 298 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 MSI2Q96DH6 328 aaKnown RBP19.44■□□□□ 0.7
TRIM28-202ENST00000341753 MRGPRX4Q96LA9 322 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 GPHA2Q96T91 129 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 V9GYS6 101 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 CACNA1EQ15878 2313 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 CDX1P47902 265 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-202ENST00000341753 RGS19P49795 217 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 UBE2KP61086 200 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 RND3P61587 244 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 C5orf24Q7Z6I8 188 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 C1QL4Q86Z23 238 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 TP53RKQ96S44 253 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 PI4KAP42356 2102 aa19.44■□□□□ 0.7
TRIM28-202ENST00000341753 GPX4P36969 197 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-202ENST00000341753 ERVFRD-1P60508 538 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 GUSBP11Q6P575 273 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 NTNG2Q96CW9 530 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 OXGR1Q96P68 337 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 OR6C1Q96RD1 312 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 MRPS17Q9Y2R5 130 aaKnown RBP19.43■□□□□ 0.7
TRIM28-202ENST00000341753 P4HA3Q7Z4N8 544 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 GAR1Q9NY12 217 aaKnown RBP19.43■□□□□ 0.7
TRIM28-202ENST00000341753 NOSIPQ9Y314 301 aaKnown RBP19.43■□□□□ 0.7
TRIM28-202ENST00000341753 HS3ST3B1Q9Y662 390 aa19.43■□□□□ 0.7
TRIM28-202ENST00000341753 IGSF23A1L1A6 192 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 NKX2-6A6NCS4 301 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 GEMIN2O14893 280 aaKnown RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 IGLV3-1P01715 115 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 HEXBP07686 556 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF133P52736 654 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 SPSB3Q6PJ21 355 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ANKRD37Q7Z713 158 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 PP6455Q8WZ26 134 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 GALNT14Q96FL9 552 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 BOD1Q96IK1 185 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 AKIRIN1Q9H9L7 192 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 IGKV1-27A0A075B6S5 117 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF724A8MTY0 619 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 OR2J2O76002 312 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 PTGDSP41222 190 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 GUCA1AP43080 201 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 DLK1P80370 383 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ENDOGQ14249 297 aaKnown RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 IL13RA2Q14627 380 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 GNMTQ14749 295 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ARL6IP1Q15041 203 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 ELOBQ15370 118 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 PRAMEF20Q5VT98 475 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 CYB561D1Q8N8Q1 229 aa19.42■□□□□ 0.7
TRIM28-202ENST00000341753 RBM24Q9BX46 236 aaKnown RBP19.42■□□□□ 0.7
TRIM28-202ENST00000341753 RUNX1Q01196 453 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 DEFA6Q01524 100 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 PPA1Q15181 289 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 HIST3H3Q16695 136 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 LGI3Q8N145 548 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 TMEM217Q8N7C4 229 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms