RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PCDHB10Q9UN67 800 aa18.51■□□□□ 0.55
SDC3-202ENST00000339394 SMIM31A0A1B0GVY4 71 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 TMPRSS2O15393 492 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 PRDX2P32119 198 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 GABRA2P47869 451 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 CEBPDP49716 269 aaPredicted RBP18.5■□□□□ 0.55
SDC3-202ENST00000339394 PIGYQ3MUY2 71 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 IDNKQ5T6J7 187 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 ATPAF1Q5TC12 328 aaPredicted RBP18.5■□□□□ 0.55
SDC3-202ENST00000339394 CD177Q8N6Q3 437 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 MRPS24Q96EL2 167 aaKnown RBP18.5■□□□□ 0.55
SDC3-202ENST00000339394 ST3GAL6Q9Y274 331 aa18.5■□□□□ 0.55
SDC3-202ENST00000339394 TMEM14DPA8MWL7 114 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 MGMTP16455 207 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 RANBP1P43487 201 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 LMO4P61968 165 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 UNC119Q13432 240 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 CROCCP3Q8IVE0 287 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 KCNG3Q8TAE7 436 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 BARHL1Q9BZE3 327 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 DNTTIP1Q9H147 329 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 PATZ1Q9HBE1 687 aaKnown RBP18.49■□□□□ 0.55
SDC3-202ENST00000339394 MIOXQ9UGB7 285 aa18.49■□□□□ 0.55
SDC3-202ENST00000339394 RSL24D1Q9UHA3 163 aaKnown RBP18.49■□□□□ 0.55
SDC3-202ENST00000339394 ADAM20O43506 726 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 IGHV2-5P01817 119 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 CAPZA1P52907 286 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 PDCD1Q15116 288 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 NHLRC3Q5JS37 347 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 ZNF788Q6ZQV5 615 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 MAPK1IP1LQ8NDC0 245 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 SELENOIQ9C0D9 397 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 ZNF665Q9H7R5 613 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 NDUFA13Q9P0J0 144 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 KAAG1Q9UBP8 84 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 METRNQ9UJH8 293 aa18.48■□□□□ 0.55
SDC3-202ENST00000339394 A0A1B0GW55 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 ZNF701M0R085 212 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 GEMIN2O14893 280 aaKnown RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 LDLRAD4O15165 306 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 MPIG6BO95866 241 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 HAND1O96004 215 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 WNT2P09544 360 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L2P0CJ85 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L3P0CJ86 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L4P0CJ87 422 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L5P0CJ88 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L6P0CJ89 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L7P0CJ90 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 RPS2P15880 293 aaKnown RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 IL2RGP31785 369 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 RBM11P57052 281 aaKnown RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 LOXL1Q08397 574 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4L9Q6RFH8 374 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 SLC36A1Q7Z2H8 476 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 OR2W3Q7Z3T1 314 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 FAM216BQ8N7L0 139 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 SDSLQ96GA7 329 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 GAFA1Q96PS6 74 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 CTSZQ9UBR2 303 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 DUX4Q9UBX2 424 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 OR5V1Q9UGF6 321 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 GLS2Q9UI32 602 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 MAB21L2Q9Y586 359 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 ITPR3Q14573 2671 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 CELSR1Q9NYQ6 3014 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 TMEM272A0A1B0GTI8 110 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 SH2D1BO14796 132 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 PAHP00439 452 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 SNRPBP14678 240 aaKnown RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 RORCP51449 518 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 PLA2G7Q13093 441 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 IL13RA2Q14627 380 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 TAF9Q16594 264 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 METAP1DQ6UB28 335 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 CIARTQ8N365 385 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 ZNRF1Q8ND25 227 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 TMEM59Q9BXS4 323 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 SEBOXQ9HB31 216 aaPredicted RBP18.47■□□□□ 0.55
SDC3-202ENST00000339394 FBLN5Q9UBX5 448 aa18.47■□□□□ 0.55
SDC3-202ENST00000339394 F5H0A9 414 aaPredicted RBP18.46■□□□□ 0.55
SDC3-202ENST00000339394 SIGLEC5O15389 551 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 TMEM127O75204 238 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 OR2H2O95918 312 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 SELLP14151 372 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 IL13RA1P78552 427 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 COL10A1Q03692 680 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 SCN1BQ07699 218 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 Q6P435 159 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 ZNF841Q6ZN19 808 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 NLRC3Q7RTR2 1065 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 DGCR14Q96DF8 476 aaKnown RBP18.46■□□□□ 0.55
SDC3-202ENST00000339394 NEIL1Q96FI4 390 aaPredicted RBP18.46■□□□□ 0.55
SDC3-202ENST00000339394 MED30Q96HR3 178 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 Q96M66 194 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 ZNF581Q9P0T4 197 aa18.46■□□□□ 0.55
SDC3-202ENST00000339394 NKX6-3A6NJ46 265 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 DEGS1O15121 323 aa18.45■□□□□ 0.54
SDC3-202ENST00000339394 OR7C1O76099 320 aaPredicted RBP18.45■□□□□ 0.54
SDC3-202ENST00000339394 CHRM2P08172 466 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms