RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LBHQ53QV2 105 aaPredicted RBP11.21□□□□□ -0.61
SDC3-201ENST00000336798 FDX2Q6P4F2 183 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 GVQW1Q8N7I0 195 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 TMEM116Q8NCL8 245 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.21□□□□□ -0.61
SDC3-201ENST00000336798 A0A1W2PN81 502 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 COL9A1P20849 921 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 MAGEA5P43359 124 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 SULT1A2P50226 295 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 ZNF154Q13106 437 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 ECSCRQ19T08 205 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 TSPO2Q5TGU0 170 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 MOGAT3Q86VF5 341 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 Q8IYB0 196 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 C5orf17Q8NAS9 161 aa11.21□□□□□ -0.61
SDC3-201ENST00000336798 SLC17A2O00624 439 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 ORM1P02763 201 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 ACAA1P09110 424 aaPredicted RBP11.21□□□□□ -0.62
SDC3-201ENST00000336798 ACAA2P42765 397 aaKnown RBP11.21□□□□□ -0.62
SDC3-201ENST00000336798 FAM78BQ5VT40 261 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 ZNF600Q6ZNG1 722 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 YIPF6Q96EC8 236 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 YBX2Q9Y2T7 364 aaKnown RBP11.21□□□□□ -0.62
SDC3-201ENST00000336798 hADV38S2A0JD32 116 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 DHRS3O75911 302 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 GLULP15104 373 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 FPR2P25090 351 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 CD96P40200 585 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 TRAT1Q6PIZ9 186 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 THSD4Q6ZMP0 1018 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 DUSP18Q8NEJ0 188 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 OR8B3Q8NGG8 313 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 OR8B2Q96RD0 313 aa11.21□□□□□ -0.62
SDC3-201ENST00000336798 CROCCQ5TZA2 2017 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 SNRPGP15A8MWD9 76 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 FAM109BQ6ICB4 259 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 TMUB1Q9BVT8 246 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 IL21Q9HBE4 155 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 SNRPCP09234 159 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 FAM87AP0C7U9 286 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 RAE1P78406 368 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 TFPI2P48307 235 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 FAM219AQ8IW50 185 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 MS4A7Q9GZW8 240 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 CXXC4Q9H2H0 198 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 PHIPQ8WWQ0 1821 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 MAP1LC3B2A6NCE7 125 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 HIST1H1DP16402 221 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 RPL30P62888 115 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 PPP1R1AQ13522 171 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 IGFBP7Q16270 282 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 SLC25A30Q5SVS4 291 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 RAB1CQ92928 201 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 LINC00615Q96LM1 132 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 OR2A5Q96R48 311 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 MAP1LC3BQ9GZQ8 125 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 TMSB15BA0A087X1C1 80 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 C9orf172C9J069 976 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 ATXN7O15265 892 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 ITGBL1O95965 494 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 BCL3P20749 454 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 RPL24P83731 157 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 RAB32Q13637 225 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 TMEM211Q6ICI0 200 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 OR10G4Q8NGN3 311 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 OR10G9Q8NGN4 311 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 OR10G7Q8NGN6 311 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 FGF20Q9NP95 211 aaPredicted RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 RALYQ9UKM9 306 aaKnown RBP11.2□□□□□ -0.62
SDC3-201ENST00000336798 TBX21Q9UL17 535 aa11.2□□□□□ -0.62
SDC3-201ENST00000336798 HSPB2A8KAH6 182 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 EML2O95834 649 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 TOMM34Q15785 309 aaPredicted RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 HSPB2Q16082 182 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 RASL12Q9NYN1 266 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 IGHV1OR21-1A0A087WYE8 117 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 TRAV39A0A0B4J263 110 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 A0A0B4J2E0 115 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 A0A1B0GX12 115 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 PPOXP50336 477 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 IL11RAQ14626 422 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 LINC01465Q8N7H1 131 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 OR5R1Q8NH85 324 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 GABRG3Q99928 467 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 CNTD2Q9H8S5 307 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 ZFP64Q9NPA5 681 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 AP4M1O00189 453 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 LINC00518Q8N0U6 118 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 SPSB1Q96BD6 273 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 LYRM2Q9NU23 88 aaPredicted RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 M0QZK8 103 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 GGCTO75223 188 aaKnown RBP11.19□□□□□ -0.62
SDC3-201ENST00000336798 ZNF250P15622 560 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 CEACAM3P40198 252 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 TMEM183BQ1AE95 376 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 ZG16BQ96DA0 208 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 PCGF1Q9BSM1 259 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 SLC45A2Q9UMX9 530 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 TRAV1-2A0A0B4J238 106 aa11.19□□□□□ -0.62
SDC3-201ENST00000336798 A0A1W2PPE3 182 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms