RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 GRB2P62993 217 aaKnown RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 RPP30P78346 268 aaKnown RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 NHLH2Q02577 135 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 TRA2AQ13595 282 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIG3-201ENST00000262327 TGIF2LXQ8IUE1 241 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 SKA3Q8IX90 412 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 SUMF1Q8NBK3 374 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 OR5L2Q8NGL0 311 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 SPACA9Q96E40 222 aaPredicted RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 NUDT16L1Q9BRJ7 211 aaKnown RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 METTL1Q9UBP6 276 aaKnown RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 MEMO1Q9Y316 297 aa8.75□□□□□ -1.01
LIG3-201ENST00000262327 PRRC2CQ9Y520 2896 aaKnown RBP8.75□□□□□ -1.01
LIG3-201ENST00000262327 IGKV1-27A0A075B6S5 117 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 A6NLC8 198 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 FOXI3A8MTJ6 420 aaPredicted RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 NPIPA2E9PIF3 369 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 NPIPA3F8WFD2 350 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 NTN3O00634 580 aaPredicted RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 DEDDO75618 318 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 TSPAN15O95858 294 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 MBPP02686 304 aaPredicted RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 PRH1P02810 166 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CCL1P22362 96 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 ACP1P24666 158 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CEBPGP53567 150 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 HGFACQ04756 655 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 RSU1Q15404 277 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 TMEM268Q5VZI3 342 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 RPUSD3Q6P087 351 aaKnown RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 UNQ6494/PRO21346Q6UXR6 183 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 MEX3BQ6ZN04 569 aaKnown RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 ZNF383Q8NA42 475 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OR52M1Q8NGK5 317 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 TCTEX1D2Q8WW35 142 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 SLAMF9Q96A28 289 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 SMOC1Q9H4F8 434 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 FBXO7Q9Y3I1 522 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 EXPH5Q8NEV8 1989 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 hCG_1809904A0A1W2PP81 198 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 A0A1W2PR64 198 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 A0A1W2PRV1 198 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 TNFSF11O14788 317 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 GEMIN2O14893 280 aaKnown RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 TLX3O43711 291 aaPredicted RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 SLC34A2O95436 690 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CST4P01036 141 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 IFNA21P01568 189 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CCL3P10147 92 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 NQO2P16083 231 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 RAB2AP61019 212 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 GJC3Q8NFK1 279 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OR9K2Q8NGE7 335 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 HAS2Q92819 552 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 SAT2Q96F10 170 aaPredicted RBP8.74□□□□□ -1.01
LIG3-201ENST00000262327 MISP3Q96FF7 219 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 SPACA1Q9HBV2 294 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OCIAD1Q9NX40 245 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 ANXA10Q9UJ72 324 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 DOCK7Q96N67 2140 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 ZDBF2Q9HCK1 2354 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 A0A1W2PPH5 198 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CD5P06127 495 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OR8U8P0C7N1 319 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OR13C7P0DN81 318 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OMGP23515 440 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 RBP2P50120 134 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 SSPNQ14714 243 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 ABCA11PQ4W5N1 156 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 AWAT1Q58HT5 328 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 TCEAL6Q6IPX3 200 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 ZNF774Q6NX45 483 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 PLXDC2Q6UX71 529 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 REC114Q7Z4M0 266 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CD300LFQ8TDQ1 290 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CCDC74BQ96LY2 380 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CHST5Q9GZS9 411 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 NELFAQ9H3P2 528 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 OPA3Q9H6K4 179 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 DNAJB11Q9UBS4 358 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 CACFD1Q9UGQ2 172 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 RARRES3Q9UL19 164 aa8.74□□□□□ -1.01
LIG3-201ENST00000262327 COL5A1P20908 1838 aaPredicted RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 LNP1A1A4G5 178 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 SERPINE3A8MV23 424 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 F10P00742 488 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 LCATP04180 440 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 MSX1P28360 303 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 HTR5AP47898 357 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 OR2B8PP59922 312 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 HIST3H3Q16695 136 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 EIF5AL1Q6IS14 154 aaKnown RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 SLC22A25Q6T423 547 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 TMEM156Q8N614 296 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 RTN4IP1Q8WWV3 396 aaPredicted RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 ULBP2Q9BZM5 246 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 CHCHD2Q9Y6H1 151 aaPredicted RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 AHCTF1Q8WYP5 2266 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 BTBD17A6NE02 478 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 CRYM-AS1A6NIL9 109 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms