RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IGHV2-70P01814 119 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FAAP20Q6NZ36 180 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C6orf201Q7Z4U5 140 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR4X2Q8NGF9 303 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR52E1Q8NGJ3 308 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR10G9Q8NGN4 311 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR10G7Q8NGN6 311 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 MVB12AQ96EY5 273 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CDCA3Q99618 268 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 KLF16Q9BXK1 252 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PDFQ9HBH1 243 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 RGPD5Q99666 1765 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TRBV6-7A0A0A0MS04 114 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 JAG1P78504 1218 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF770Q6IQ21 691 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PERPQ96FX8 193 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PBOV1Q9GZY1 135 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR1A1Q9P1Q5 309 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CCL27Q9Y4X3 112 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PDCD6O75340 191 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DMRTA1Q5VZB9 504 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C16orf82Q7Z2V1 217 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CYB561D1Q8N8Q1 229 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 IL1F10Q8WWZ1 152 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 IL17FQ96PD4 163 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 HSPB9Q9BQS6 159 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SFXN3Q9BWM7 321 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CDCP1Q9H5V8 836 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM38BQ9NVV0 291 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TRAV1-1A0A0B4J248 108 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF816-ZNF321PA0A0X1KG74 233 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C7orf71A4D174 169 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MASP2O00187 686 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SMIM13P0DJ93 91 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ACKR1Q16570 336 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ACSF3Q4G176 576 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM255AQ5JRV8 349 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR10S1Q8NGN2 331 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MARS2Q96GW9 593 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CBLN4Q9NTU7 201 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GPR132Q9UNW8 380 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TRIP11Q15643 1979 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MEX3AA1L020 520 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 AQP7P3A6NL99 342 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 COX6CP09669 75 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 RPL18Q07020 188 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 POM121L1PQ3SYA9 428 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C5orf30Q96GV9 206 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 RBM24Q9BX46 236 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SEBOXQ9HB31 216 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SLC52A3Q9NQ40 469 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MCTS1Q9ULC4 181 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR51B2Q9Y5P1 312 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 S1PR2O95136 353 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PRSS56P0CW18 603 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SCGB1C2P0DMR2 95 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 UCP3P55916 312 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM136Q6ZRR5 245 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MORN4Q8NDC4 146 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR51H1Q8NH63 302 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GRAMD2BQ96HH9 432 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C20orf144Q9BQM9 153 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TWSG1Q9GZX9 223 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PRDM13Q9H4Q3 707 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MRPL42Q9Y6G3 142 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SEMA4FO95754 770 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CA2P00918 260 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CD5P06127 495 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C1SP09871 688 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DUSP3P51452 185 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 AGFG1P52594 562 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ARSJQ5FYB0 599 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 UNQ9370/PRO34162Q6UXP9 181 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 HINT2Q9BX68 163 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 LTB4R2Q9NPC1 389 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SF3B6Q9Y3B4 125 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CDIPTO14735 213 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ADAM20O43506 726 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DDNO94850 711 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 RNF224P0DH78 156 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CA7P43166 264 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 H2BFSP57053 126 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ARL16Q0P5N6 197 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DCAF10Q5QP82 559 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GABRQQ9UN88 632 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 UBR2Q8IWV8 1755 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 A0A0A6YYD5 115 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR2W5A6NFC9 320 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 LINC01387J3KSC0 135 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DUX1O43812 170 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 P04436 131 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TYMSP04818 313 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 HTR1DP28221 377 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM52BQ4KMG9 183 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 IER5LQ5T953 404 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GPX7Q96SL4 187 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 HSF4Q9ULV5 492 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 B9D1Q9UPM9 204 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1W2PNV4 684 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SDCBPO00560 298 aaPredicted RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms