RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KIR3DL3Q8N743 410 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR6K2Q8NGY2 324 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR4S2Q8NH73 311 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RNF185Q96GF1 192 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF426Q9BUY5 554 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DERL2Q9GZP9 239 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 POPDC3Q9HBV1 291 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 INSIG2Q9Y5U4 225 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PRR36Q9H6K5 1346 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TRGV5A0A0B4J1U4 118 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 F5H697 171 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 JTBO76095 146 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MT-ATP6P00846 226 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NID1P14543 1247 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PSMB1P20618 241 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GUCA2BQ16661 112 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RAB6CQ53S08 254 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CPZQ66K79 652 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LINC00696Q6ZRV3 163 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LRP11Q86VZ4 500 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 BEND2Q8NDZ0 799 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR4C16Q8NGL9 310 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GPR148Q8TDV2 347 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NEU4Q8WWR8 484 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 EMG1Q92979 244 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM45BQ96B21 275 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC3BQ96PB8 259 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FGF21Q9NSA1 209 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RBFOX1Q9NWB1 397 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CSNK1G3Q9Y6M4 447 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NUP188Q5SRE5 1749 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GAGE10A6NGK3 116 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM212A6NML5 194 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 M0R135 149 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GPR31O00270 319 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 KCNE1P15382 129 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MGMTP16455 207 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ACP1P24666 158 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 VEGFBP49765 207 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GNG10P50151 68 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SULT1A1P50225 295 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 HYAL2Q12891 473 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC10A2Q12908 348 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SELENBP1Q13228 472 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RHBDD2Q6NTF9 364 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PLBD1Q6P4A8 553 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ACOT7LQ6ZUV0 252 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 AMIGO3Q86WK7 504 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR8A1Q8NGG7 326 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR51S1Q8NGJ8 323 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR1L4Q8NGR5 311 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF689Q96CS4 500 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF799Q96GE5 643 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MCHR1Q99705 422 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DDA1Q9BW61 102 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TXNIPQ9H3M7 391 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 KLK11Q9UBX7 282 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NPTNQ9Y639 398 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 WNT6Q9Y6F9 365 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 C4AP0C0L4 1744 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 C4BP0C0L5 1744 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GV90 55 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN24A6NM45 220 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FABP7O15540 132 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NUDT21O43809 227 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LANCL1O43813 399 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GBAP04062 536 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CD1AP06126 327 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ALDOCP09972 364 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 HIST1H1CP16403 213 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SDC1P18827 310 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 KLF3P57682 345 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 EMX2Q04743 252 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 STXBP6Q8NFX7 210 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RNF166Q96A37 237 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PRAP1Q96NZ9 151 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ASIC5Q9NY37 505 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LOXL2Q9Y4K0 774 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GPR45Q9Y5Y3 372 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 IGLON5A6NGN9 336 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FAM157CP0CG43 387 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ITGB7P26010 798 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 HTR1DP28221 377 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CD80P33681 288 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CCR6P51684 374 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TWIST1Q15672 202 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 Q6ZNX1 250 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ANKRD33Q7Z3H0 272 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35A4Q96G79 324 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ADOQ96SZ5 270 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC30A3Q99726 388 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ANAPC13Q9BS18 74 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SGPP1Q9BX95 441 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TINAGL1Q9GZM7 467 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PARP12Q9H0J9 701 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OCIAD1Q9NX40 245 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OSGIN1Q9UJX0 560 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TGIF2-C20orf24A0A0A6YYL0 155 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 KLKB1P03952 638 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OPN1LWP04000 364 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms