RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SIRPB1O00241 398 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 GCM2O75603 506 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-216ENST00000637968 ONECUT2O95948 504 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 PTGER4P35408 488 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 EMP2P54851 167 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 TAS2R30P59541 319 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 DCAF7P61962 342 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 FUT5Q11128 374 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 Q6ZVH6 145 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 RNF44Q7L0R7 432 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 OR52E1Q8NGJ3 308 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SPIN2AQ99865 258 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SPIN2BQ9BPZ2 258 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SLC2A4RGQ9NR83 387 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 CMC2Q9NRP2 79 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF319Q9P2F9 582 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SIGLEC7Q9Y286 467 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 POLR1DQ9Y2S0 133 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 NHSL1Q5SYE7 1610 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 GOLGA4Q13439 2230 aaKnown RBP5.09□□□□□ -1.59
SCN1A-216ENST00000637968 CACNA1SQ13698 1873 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 FIGNL2A6NMB9 653 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 MSTNO14793 375 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 NUDT3O95989 172 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SERPINE2P07093 398 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 FAHP16930 419 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 PDLIM4P50479 330 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 PSG6Q00889 435 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF90Q03938 601 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 HSD52Q0P140 79 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 GABRA6Q16445 453 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 LCN15Q6UWW0 184 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 C17orf99Q6UX52 265 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 C5orf17Q8NAS9 161 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 AQP3Q92482 292 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 MRGPRFQ96AM1 343 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 ANAPC13Q9BS18 74 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM121BQ9BXQ6 578 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-216ENST00000637968 UBTD1Q9HAC8 227 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 FRRS1LQ9P0K9 344 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 SERGEFQ9UGK8 458 aa5.09□□□□□ -1.59
SCN1A-216ENST00000637968 NKX2-6A6NCS4 301 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 DPRXA6NFQ7 191 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 FAM157AC9JC47 383 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 HYPMO75409 117 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 SAP30O75446 220 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 RHBDL1O75783 438 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 NDUFB8O95169 186 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 HNRNPA1P09651 372 aaKnown RBP eCLIP5.09□□□□□ -1.6
SCN1A-216ENST00000637968 FTH1P19P0C7X4 201 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 KITLGP21583 273 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 CMPK1P30085 196 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 ATP5IP56385 69 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-216ENST00000637968 TBPL1P62380 186 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 TESK1Q15569 626 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 FAM71E1Q6IPT2 247 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 SHISA2Q6UWI4 295 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 PIANPQ8IYJ0 282 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 ADAD2Q8NCV1 583 aaKnown RBP5.09□□□□□ -1.6
SCN1A-216ENST00000637968 GPR146Q96CH1 333 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 BANF2Q9H503 90 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 ELOVL5Q9NYP7 299 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 FLRT3Q9NZU0 649 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 THYN1Q9P016 225 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 JKAMPQ9P055 326 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 ST6GALNAC2Q9UJ37 374 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 B3GALT5Q9Y2C3 310 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 MRPS28Q9Y2Q9 187 aaKnown RBP5.09□□□□□ -1.6
SCN1A-216ENST00000637968 IER3IP1Q9Y5U9 82 aa5.09□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM212A6NML5 194 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 G3V4G9 280 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 H0YIZ8 118 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 M0R2Z0 102 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 FRS3O43559 492 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 LMO2P25791 158 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 BSGP35613 385 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 LCN2P80188 198 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF85Q03923 595 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 TLE1Q04724 770 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 NR0B2Q15466 257 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 HLA-DRB5Q30154 266 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM176BQ3YBM2 270 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-216ENST00000637968 PLCXD3Q63HM9 321 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 DHRS13Q6UX07 377 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF547Q8IVP9 402 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 OR5A1Q8NGJ0 315 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 OR52E5Q8NH55 327 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 NEURL3Q96EH8 262 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 OR2V2Q96R30 315 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 GPER1Q99527 375 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 EFCAB11Q9BUY7 163 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 RNF39Q9H2S5 420 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM14AQ9Y6G1 99 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 COL22A1Q8NFW1 1626 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-216ENST00000637968 SHROOM3Q8TF72 1996 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 A0A0G2JMM0 328 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 SMIM28A0A1B0GU29 152 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 A0A1W2PPB8 328 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 A0A1W2PPV4 95 aa5.08□□□□□ -1.6
SCN1A-216ENST00000637968 KIR3DP1A8MWS1 328 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms