RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 APOBP04114 4563 aaKnown RBP3.37□□□□□ -1.87
LINC00540-201ENST00000611481 IGKV3D-15A0A087WSY6 115 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 A0A087WZ39 114 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 FAM74A7A6NL05 159 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 TEX46H3BTG2 121 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 GPR171O14626 319 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 EI24O14681 340 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 TAPBPO15533 448 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 VAPBO95292 243 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 IGKV3-15P01624 115 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ADORA3P0DMS8 318 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 IMPDH1P20839 514 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 CCNOP22674 350 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 STOMP27105 288 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ELK4P28324 431 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 GTF2E2P29084 291 aaKnown RBP3.37□□□□□ -1.87
LINC00540-201ENST00000611481 HMOX2P30519 316 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 GLRXP35754 106 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 CFHR2P36980 270 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 RAP1GDS1P52306 607 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 PLTPP55058 493 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 AP1S2P56377 157 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 BRWD1-AS2P59051 145 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 RPL24P83731 157 aaKnown RBP3.37□□□□□ -1.87
LINC00540-201ENST00000611481 IRF8Q02556 426 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF763Q0D2J5 394 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 LTB4RQ15722 352 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 LY6EQ16553 131 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 FAM74A3Q4VXF1 159 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 APOOLQ6UXV4 268 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 KRTAP5-2Q701N4 177 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 NKAIN4Q8IVV8 208 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ODF3L1Q8IXM7 274 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 TCEANCQ8N8B7 351 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 SLC37A3Q8NCC5 494 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 PROKR2Q8NFJ6 384 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 OR1L6Q8NGR2 347 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 OR1K1Q8NGR3 316 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 C18orf15Q96N68 181 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 TSPAN32Q96QS1 320 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 OR5B2Q96R09 309 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 NKX3-1Q99801 234 aaPredicted RBP3.37□□□□□ -1.87
LINC00540-201ENST00000611481 NMUR2Q9GZQ4 415 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 OR51B5Q9H339 312 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ANKRD19PQ9H560 264 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 NT5DC2Q9H857 520 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 CCNB1IP1Q9NPC3 277 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 IL20Q9NYY1 176 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 PTTG3PQ9NZH4 202 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ZNRD1Q9P1U0 126 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 ASB4Q9Y574 426 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 KIAA2026Q5HYC2 2103 aa3.37□□□□□ -1.87
LINC00540-201ENST00000611481 TCRBV4S1A1TA0A5B7 111 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 SNURFLB1AK76 121 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FBP2O00757 339 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CRTAPO75718 401 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 OR2J3O76001 311 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 UTS2O95399 124 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CLPTM1O96005 669 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FBP1P09467 338 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 INAFM2P0DMQ5 153 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CCL2P13500 99 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CBR1P16152 277 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF26P17031 533 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 LCN1P31025 176 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 RRM2P31350 389 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 EIF1P41567 113 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 RPL27P61353 136 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 RPS23P62266 143 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CDK16Q00536 496 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 RIGQ13278 110 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 C18orf21Q32NC0 220 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 VPS26BQ4G0F5 336 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 TMEM155Q4W5P6 130 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 CYBRD1Q53TN4 286 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 ATRAIDQ6UW56 229 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 UQCC3Q6UW78 93 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 LINC00336Q6ZUF6 198 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 Q6ZVQ6 151 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 TRMT10CQ7L0Y3 403 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FGFRL1Q8N441 504 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FNDC5Q8NAU1 212 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 OR9G4Q8NGQ1 327 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FBXO25Q8TCJ0 367 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 MAGEE2Q8TD90 523 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF473Q8WTR7 871 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 ASB9Q96DX5 294 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FNDC4Q9H6D8 234 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 NRN1Q9NPD7 142 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 TREX1Q9NSU2 369 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 DCAF13Q9NV06 445 aaKnown RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 IL36GQ9NZH8 169 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF221Q9UK13 617 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 PEX16Q9Y5Y5 336 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 DNAH17Q9UFH2 4485 aa3.36□□□□□ -1.87
LINC00540-201ENST00000611481 FLG2Q5D862 2391 aaPredicted RBP3.36□□□□□ -1.87
LINC00540-201ENST00000611481 hCG_1818297A0A087WSY0 165 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 A0A0A6YYD5 115 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 TRBV4-1A0A0J9YWV2 114 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 CEACAM18A8MTB9 384 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms