RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FABP4P15090 132 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 PNLIPP16233 465 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 Q8WTZ3 238 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 CEACAM18A8MTB9 384 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 ZNHIT1O43257 154 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 HEXBP07686 556 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 CFHR1Q03591 330 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 RSU1Q15404 277 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 FAM69BQ5VUD6 431 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 HEPN1Q6WQI6 88 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 OR1N1Q8NGS0 311 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 SUCNR1Q9BXA5 334 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 UBE2ZQ9H832 354 aaPredicted RBP16.02■□□□□ 0.16
UPF1-210ENST00000600689 B3GAT1Q9P2W7 334 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 HS3ST3B1Q9Y662 390 aa16.02■□□□□ 0.16
UPF1-210ENST00000600689 NSG1A0A0A6YYJ2 146 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 SLC34A2O95436 690 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 PAX6P26367 422 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 SMAD4Q13485 552 aaKnown RBP16.02■□□□□ 0.15
UPF1-210ENST00000600689 GAMTQ14353 236 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 HNF4GQ14541 408 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 DDIT4LQ96D03 193 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 LYZL4Q96KX0 146 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 SLC7A11Q9UPY5 501 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 DMRT1Q9Y5R6 373 aa16.02■□□□□ 0.15
UPF1-210ENST00000600689 IGHV3-15A0A0B4J1V0 119 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 STARD6P59095 220 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 ERVFRD-1P60508 538 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 RHEBQ15382 184 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 SURF2Q15527 256 aaPredicted RBP16.01■□□□□ 0.15
UPF1-210ENST00000600689 OR1L3Q8NH93 324 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 PLEKHA2Q9HB19 425 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 NCOA6Q14686 2063 aaPredicted RBP16.01■□□□□ 0.15
UPF1-210ENST00000600689 CRYM-AS1A6NIL9 109 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 LIPT2A6NK58 231 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 IGHG1P01857 330 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 HOXA5P20719 270 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 P2RY1P47900 373 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 AFF3P51826 1226 aaKnown RBP16.01■□□□□ 0.15
UPF1-210ENST00000600689 SSX9Q7RTT3 188 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 CYB561D1Q8N8Q1 229 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 SLC38A9Q8NBW4 561 aa16.01■□□□□ 0.15
UPF1-210ENST00000600689 BLACEA4D250 179 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ZNF726A6NNF4 738 aa16■□□□□ 0.15
UPF1-210ENST00000600689 LMO7DNF2Z398 122 aa16■□□□□ 0.15
UPF1-210ENST00000600689 GATCO43716 136 aaKnown RBP16■□□□□ 0.15
UPF1-210ENST00000600689 SEC11BP0C7V7 166 aa16■□□□□ 0.15
UPF1-210ENST00000600689 MTCP1P56278 107 aa16■□□□□ 0.15
UPF1-210ENST00000600689 DLK1P80370 383 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ZNF574Q6ZN55 896 aaPredicted RBP16■□□□□ 0.15
UPF1-210ENST00000600689 TMEM123Q8N131 208 aa16■□□□□ 0.15
UPF1-210ENST00000600689 SMOC1Q9H4F8 434 aa16■□□□□ 0.15
UPF1-210ENST00000600689 AK3Q9UIJ7 227 aa16■□□□□ 0.15
UPF1-210ENST00000600689 CCDC187A0A096LP49 1063 aa16■□□□□ 0.15
UPF1-210ENST00000600689 A0A1W2PQD3 144 aa16■□□□□ 0.15
UPF1-210ENST00000600689 MSTNO14793 375 aa16■□□□□ 0.15
UPF1-210ENST00000600689 SOD3P08294 240 aa16■□□□□ 0.15
UPF1-210ENST00000600689 RNF4P78317 190 aa16■□□□□ 0.15
UPF1-210ENST00000600689 RALGAPA1Q6GYQ0 2036 aa16■□□□□ 0.15
UPF1-210ENST00000600689 DOK3Q7L591 496 aa16■□□□□ 0.15
UPF1-210ENST00000600689 C17orf82Q86X59 251 aaPredicted RBP16■□□□□ 0.15
UPF1-210ENST00000600689 NTNG2Q96CW9 530 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ANXA10Q9UJ72 324 aa16■□□□□ 0.15
UPF1-210ENST00000600689 IGKV3D-11A0A0A0MRZ8 115 aa16■□□□□ 0.15
UPF1-210ENST00000600689 GPR137BO60478 399 aa16■□□□□ 0.15
UPF1-210ENST00000600689 FOLR1P15328 257 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ATP6V0CP27449 155 aa16■□□□□ 0.15
UPF1-210ENST00000600689 CDX1P47902 265 aaPredicted RBP16■□□□□ 0.15
UPF1-210ENST00000600689 RND3P61587 244 aa16■□□□□ 0.15
UPF1-210ENST00000600689 HNRNPKP61978 463 aaKnown RBP eCLIP16■□□□□ 0.15
UPF1-210ENST00000600689 TMEM176BQ3YBM2 270 aaPredicted RBP16■□□□□ 0.15
UPF1-210ENST00000600689 SLC22A25Q6T423 547 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ZNF610Q8N9Z0 462 aa16■□□□□ 0.15
UPF1-210ENST00000600689 LYPD6BQ8NI32 183 aa16■□□□□ 0.15
UPF1-210ENST00000600689 TUBA4BQ9H853 241 aa16■□□□□ 0.15
UPF1-210ENST00000600689 ANAPC10Q9UM13 185 aa16■□□□□ 0.15
UPF1-210ENST00000600689 RBFOX3A6NFN3 312 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 ZNF724A8MTY0 619 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 H3BMH7 237 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 CTSDP07339 412 aaPredicted RBP15.99■□□□□ 0.15
UPF1-210ENST00000600689 ZNF43P17038 809 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 SPINK2P20155 84 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 CLDN17P56750 224 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 DCAF7P61962 342 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 CLEC12BQ2HXU8 276 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 DMRTC2Q8IXT2 367 aaPredicted RBP15.99■□□□□ 0.15
UPF1-210ENST00000600689 INTS12Q96CB8 462 aaKnown RBP15.99■□□□□ 0.15
UPF1-210ENST00000600689 MUCL1Q96DR8 90 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 TREM2Q9NZC2 230 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 PPP4R1LQ9P1A2 415 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 TUBD1Q9UJT1 453 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 ST8SIA3O43173 380 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 SSSCA1O60232 199 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 CSNK1A1P48729 337 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 ZNF41P51814 821 aaPredicted RBP15.99■□□□□ 0.15
UPF1-210ENST00000600689 NXPH1P58417 271 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 PPA1Q15181 289 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 SPIN3Q5JUX0 258 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 PRAMEF20Q5VT98 475 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 OR2T2Q6IF00 324 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms