RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	ASCL4	Q6XD76	172 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	LHFPL2	Q6ZUX7	228 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	LYPD6	Q86Y78	171 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628		Q8IYB0	196 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	SAXO1	Q8IYX7	474 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	ZNF561	Q8N587	486 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	OR5AK2	Q8NH90	309 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	FAM216A	Q8WUB2	273 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	SMIM19	Q96E16	107 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	TMEM80	Q96HE8	168 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	AJUBA	Q96IF1	538 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	CEP19	Q96LK0	163 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	OPALIN	Q96PE5	141 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	ANKRD60	Q9BZ19	345 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	FAM234A	Q9H0X4	552 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	DUSP21	Q9H596	190 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	ZCCHC4	Q9H5U6	513 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	PLEKHA1	Q9HB21	404 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	RHOF	Q9HBH0	211 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	SLC25A10	Q9UBX3	287 aa	Predicted RBP	7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	SLC7A11	Q9UPY5	501 aa		7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	LSM2	Q9Y333	95 aa	Known RBP	7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	SOX21	Q9Y651	276 aa	Predicted RBP	7.22	□□□□□ -1.25
SSBP4-208	ENST00000600628	TRBV5-7	A0A0A0MS05	114 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628		H3BSH0	61 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	NDUFB3	O43676	98 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	SULT1B1	O43704	296 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	TOX4	O94842	621 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	KDM4B	O94953	1096 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	NXPH2	O95156	264 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	CD37	P11049	281 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	IGFBP3	P17936	291 aa	Predicted RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	PRKACB	P22694	351 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	NPBWR2	P48146	333 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	GBX2	P52951	348 aa	Predicted RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ATP1B3	P54709	279 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ARF6	P62330	175 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	PDCD1	Q15116	288 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	CNN3	Q15417	329 aa	Known RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	C6orf141	Q5SZD1	244 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ELP2	Q6IA86	826 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	RBMS3	Q6XE24	437 aa	Known RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	TMPRSS11A	Q6ZMR5	421 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	C17orf107	Q6ZR85	190 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	SERPINA12	Q8IW75	414 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	PIP4P2	Q8N4L2	257 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ZNF676	Q8N7Q3	588 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	NANOGP1	Q8N7R0	232 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	SIGLECL1	Q8N7X8	197 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	TRMT10A	Q8TBZ6	339 aa	Known RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ST8SIA4	Q92187	359 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	BORCS8	Q96FH0	119 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	CDCA4	Q9BXL8	241 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	MS4A7	Q9GZW8	240 aa	Predicted RBP	7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	DNAJB11	Q9UBS4	358 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	ZNF281	Q9Y2X9	895 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	NBEAL1	Q6ZS30	2694 aa		7.21	□□□□□ -1.26
SSBP4-208	ENST00000600628	IGHV3OR16-10	A0A075B7F0	116 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	TRAV40	A0A0B4J280	105 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	IGHV1-69D	A0A0B4J2H0	117 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	FAM230A	A0A1W2PPH8	454 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	TMEM82	A0PJX8	343 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	TMEM89	A2RUT3	159 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	NKX6-3	A6NJ46	265 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	RNASEK-C17orf49	H0YIS7	233 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	SLC1A7	O00341	560 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	SC5D	O75845	299 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	IGHV1-69	P01742	117 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	RBP4	P02753	201 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	TK1	P04183	234 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	ALDOB	P05062	364 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	CDK1	P06493	297 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	FST	P19883	344 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	PRTN3	P24158	256 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	MTCP1	P56278	107 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	UBA52	P62987	128 aa	Known RBP	7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	BDH1	Q02338	343 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	PAX5	Q02548	391 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	IKZF1	Q13422	519 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	KISS1	Q15726	138 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	SPIN3	Q5JUX0	258 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	SLC25A26	Q70HW3	274 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	TCF23	Q7RTU1	214 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	MKX	Q8IYA7	352 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	PXT1	Q8NFP0	134 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	OR5D14	Q8NGL3	314 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	OR13C3	Q8NGS6	347 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	OR13C9	Q8NGT0	318 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	GPR148	Q8TDV2	347 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	NPRL2	Q8WTW4	380 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	SGCD	Q92629	289 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	GHSR	Q92847	366 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	COMMD4	Q9H0A8	199 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	VCX	Q9H320	206 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	ZMAT3	Q9HA38	289 aa	Known RBP	7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	HMG20A	Q9NP66	347 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	C19orf12	Q9NSK7	152 aa		7.2	□□□□□ -1.26
SSBP4-208	ENST00000600628	RBFOX1	Q9NWB1	397 aa	Known RBP	7.2	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms