RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MMP9P14780 707 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 FSTP19883 344 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 BCL3P20749 454 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 MAP2K4P45985 399 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 INSL4Q14641 139 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 KISS1Q15726 138 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 SMIM21Q3B7S5 101 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 C11orf91Q3C1V1 193 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 Q499Y3 187 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 UNQ9370/PRO34162Q6UXP9 181 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 BTN2A1Q7KYR7 527 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 SLC36A1Q7Z2H8 476 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 ZNRF1Q8ND25 227 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 OR52N4Q8NGI2 321 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 DERL3Q96Q80 235 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 OR14A2Q96R54 314 aa16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 RBFOX1Q9NWB1 397 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-221ENST00000599833 ZNF879B4DU55 563 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 GABRPO00591 440 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 ANGPTL7O43827 346 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 NXPH2O95156 264 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 KNG1P01042 644 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 PPIAL4GP0DN37 164 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 SRD5A1P18405 259 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 PRDX2P32119 198 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 IL13RA1P78552 427 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 IKZF1Q13422 519 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 TPBGQ13641 420 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 KRTAP21-3Q3LHN1 58 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 OR5D18Q8NGL1 313 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 C8orf46Q8TAG6 207 aa16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 NKX3-1Q99801 234 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 SEBOXQ9HB31 216 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 RPUSD1Q9UJJ7 312 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-221ENST00000599833 ENSAO43768 121 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 ZNF737O75373 536 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 SFTPBP07988 381 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 RAB3AP20336 220 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 HNF1AP20823 631 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 POU3F4P49335 361 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 CAV3P56539 151 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 GABARAPL2P60520 117 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 TBCEQ15813 527 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 SAXO1Q8IYX7 474 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 ST8SIA4Q92187 359 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 UPRTQ96BW1 309 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 DCTN5Q9BTE1 182 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 ELL3Q9HB65 397 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 ISYNA1Q9NPH2 558 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 SF3B6Q9Y3B4 125 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 AUP1Q9Y679 476 aa16.1■□□□□ 0.17
SHKBP1-221ENST00000599833 NKX6-3A6NJ46 265 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 INMTO95050 263 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 CD2P06729 351 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 GABRA2P47869 451 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 GPR50Q13585 617 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 MED22Q15528 200 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 CD276Q5ZPR3 534 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 ASCL4Q6XD76 172 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 MKXQ8IYA7 352 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 ZSCAN4Q8NAM6 433 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 Q8NFD4 153 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 MED30Q96HR3 178 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 TBX15Q96SF7 602 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 SIRPDQ9H106 197 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 PPIL3Q9H2H8 161 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 HMG20AQ9NP66 347 aa16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 SLC25A10Q9UBX3 287 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-221ENST00000599833 A0A1W2PPK0 400 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 GPR37O15354 613 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 NDUFB3O43676 98 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 ECDO95905 644 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 HCKP08631 526 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 CALCBP10092 127 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 FGF12P61328 243 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF146Q15072 292 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 FAM27D1Q5T7N8 215 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 Q8IYB0 196 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 FAM58AQ8N1B3 248 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM138Q9NPI0 162 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 ACOT13Q9NPJ3 140 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 COL6A5A8TX70 2615 aa16.08■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM82A0PJX8 343 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 IGHV4-38-2P0DP08 117 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 CPEP16870 476 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 OR3A4PP47883 348 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 COL10A1Q03692 680 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 EMX1Q04741 257 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 MLLT11Q13015 90 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 LRRC10Q5BKY1 277 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 LIPKQ5VXJ0 399 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 BTNL3Q6UXE8 466 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM91Q6ZNR0 172 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF561Q8N587 486 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 PXT1Q8NFP0 134 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 EMG1Q92979 244 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 CCDC90BQ9GZT6 254 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 NOX4Q9NPH5 578 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 BLOC1S6Q9UL45 172 aa16.07■□□□□ 0.16
SHKBP1-221ENST00000599833 K7N7A8 449 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms