RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MPV17LQ2QL34 196 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 WDR82Q6UXN9 313 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 Q6ZTK2 550 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 FAM90A1Q86YD7 464 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 C1orf87Q8N0U7 546 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 Q8TCH9 128 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 FCAMRQ8WWV6 532 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 Q96M66 194 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 VRK1Q99986 396 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-209ENST00000597423 CXorf56Q9H5V9 222 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 UBTD1Q9HAC8 227 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 RNF7Q9UBF6 113 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 V9GYH0 126 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 CHD6Q8TD26 2715 aa12.9□□□□□ -0.34
TRIM28-209ENST00000597423 SMG1Q96Q15 3661 aaKnown RBP12.9□□□□□ -0.35
TRIM28-209ENST00000597423 A0A0G2JMP0 313 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 IGHV3-64DA0A0J9YX35 117 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 A0A0X1KG70 313 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 A0A1W2PP11 408 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 FAM221AA4D161 298 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 RAB27BO00194 218 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 SH2D1BO14796 132 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 GSTP1P09211 210 aaKnown RBP12.89□□□□□ -0.35
TRIM28-209ENST00000597423 PRKACAP17612 351 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 GLRA1P23415 457 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 GABRR1P24046 479 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 PRSS3P35030 304 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 RBM11P57052 281 aaKnown RBP12.89□□□□□ -0.35
TRIM28-209ENST00000597423 ERVK11-1P61568 191 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 DCTN2Q13561 401 aaKnown RBP12.89□□□□□ -0.35
TRIM28-209ENST00000597423 TAF9Q16594 264 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 SMIM21Q3B7S5 101 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 CDNFQ49AH0 187 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 SPIN3Q5JUX0 258 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 C20orf204Q6ZNR8 217 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 DTX2Q86UW9 622 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 OR8H2Q8N162 312 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 Q8N402 240 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 DTX3Q8N9I9 347 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 OR4M2Q8NGB6 313 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 LRRC29Q8WV35 223 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 NEU4Q8WWR8 484 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-209ENST00000597423 GCM1Q9NP62 436 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 PALMDQ9NP74 551 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 PLEKHJ1Q9NW61 149 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 RBFOX1Q9NWB1 397 aaKnown RBP12.89□□□□□ -0.35
TRIM28-209ENST00000597423 NPTNQ9Y639 398 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 MYO18BQ8IUG5 2567 aa12.89□□□□□ -0.35
TRIM28-209ENST00000597423 A1L4Q6 167 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 SULT1C2O00338 296 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 DEGS1O15121 323 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 CLDN1O95832 211 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 HLA-DQB1P01920 261 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 GLAP06280 429 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 DANCRP0C864 163 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 FUT3P21217 361 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 PTH2RP49190 550 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 INPP1P49441 399 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 PNLIPRP3Q17RR3 467 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF181Q2M3W8 571 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 HACD4Q5VWC8 232 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF826PQ6ZT77 177 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 SNX29P2Q8IUI4 249 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 IZUMO1Q8IYV9 350 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 ZFAND2BQ8WV99 257 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 ABHD1Q96SE0 405 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 SRRQ9GZT4 340 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 CLEC4MQ9H2X3 399 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-209ENST00000597423 AUNIPQ9H7T9 357 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 SCPEP1Q9HB40 452 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 HES4Q9HCC6 221 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 HSF4Q9ULV5 492 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 DOPEY1Q5JWR5 2465 aa12.88□□□□□ -0.35
TRIM28-209ENST00000597423 SERPINE3A8MV23 424 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 GABARAPH6UMI1 98 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 GEMIN2O14893 280 aaKnown RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 SOCS1O15524 211 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 GSTZ1O43708 216 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 OR7C1O76099 320 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 KNG1P01042 644 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 GSTT2BP0CG30 244 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 PMELP40967 661 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 MRPS15P82914 257 aaKnown RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 TRIQKQ629K1 86 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 C19orf18Q8NEA5 215 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF488Q96MN9 340 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 TRAF4Q9BUZ4 470 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 SEBOXQ9HB31 216 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-209ENST00000597423 DNAJB11Q9UBS4 358 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 LAMP3Q9UQV4 416 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 PLEKHA6Q9Y2H5 1048 aa12.87□□□□□ -0.35
TRIM28-209ENST00000597423 UBR5O95071 2799 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 IGHV1-69-2A0A0G2JMI3 117 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 SRRM5B3KS81 715 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 MCRIP1C9JLW8 97 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 F8VVB4 439 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 F8VWA3 439 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 J3QRK9 145 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 PDCD6O75340 191 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 CA11O75493 328 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 272.1 ms