RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 FAM90A18PA6NE21 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A16PA6NEW6 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A20PA6NIJ5 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A8PA6NJQ4 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A7PA6NKC0 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A22PA8MWA6 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A12PA8MX19 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A5PA8MXJ8 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A23PA8MXZ1 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 SOCS1O15524 211 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 GSTZ1O43708 216 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 CLDN1O95832 211 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A15PP0C7V4 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A13PP0C7W8 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A14PP0C7W9 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM90A24PP0C7X0 464 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 DANCRP0C864 163 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 TNFSF4P23510 183 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 CPT2P23786 658 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 RBM11P57052 281 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 PITPNAQ00169 270 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 DCTN2Q13561 401 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 ZNF260Q3ZCT1 412 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM209AQ5JX71 171 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 SIGIRRQ6IA17 410 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 C11orf71Q6IPW1 123 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 DTX2Q86UW9 622 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 Q8IYB0 196 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 Q8TCH9 128 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 ERGIC1Q969X5 290 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 GAL3ST1Q99999 423 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 MS4A5Q9H3V2 200 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 PALMDQ9NP74 551 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 C1orf123Q9NWV4 160 aa12.45□□□□□ -0.42
SHKBP1-211ENST00000595945 A6NLC8 198 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 CD8AP01732 235 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PPOXP50336 477 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 IFITM3Q01628 133 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 IL13RA2Q14627 380 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 TESK1Q15569 626 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PCGF3Q3KNV8 242 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PIGYQ3MUY2 71 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PYDC2Q56P42 97 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PLAC9Q5JTB6 97 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 RTN4RL2Q86UN3 420 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 FAM58AQ8N1B3 248 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 BATF2Q8N1L9 274 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 C15orf40Q8WUR7 153 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PHF21AQ96BD5 680 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 FN3KRPQ9HA64 309 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 DYNLRB1Q9NP97 96 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 CBLN4Q9NTU7 201 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 UFSP2Q9NUQ7 469 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 FBXO9Q9UK97 447 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 ST3GAL6Q9Y274 331 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 MRPS7Q9Y2R9 242 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 CENPEQ02224 2701 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 DCHS2Q6V1P9 2916 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 PTPN13Q12923 2485 aa12.44□□□□□ -0.42
SHKBP1-211ENST00000595945 SRRM5B3KS81 715 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 C3orf80F5H4A9 247 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 UPK1BO75841 260 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 LHBP01229 141 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 MELTFP08582 738 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 CSF3P09919 207 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 SNRPD2P62316 118 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 MRPS10P82664 201 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 TAF9Q16594 264 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 BAK1Q16611 211 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 LINC00596Q86U02 117 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 MOGAT3Q86VF5 341 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 SNX29P2Q8IUI4 249 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 ZCCHC24Q8N2G6 241 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 Q8N402 240 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 SMIM4Q8WVI0 70 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 EMG1Q92979 244 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 TRIM63Q969Q1 353 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 CYYR1Q96J86 154 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 TRAF4Q9BUZ4 470 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 GCM1Q9NP62 436 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 ZNF581Q9P0T4 197 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 IL36RNQ9UBH0 155 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 KCNK7Q9Y2U2 307 aa12.43□□□□□ -0.42
SHKBP1-211ENST00000595945 GCN1Q92616 2671 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 MFNGO00587 321 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 GEMIN2O14893 280 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 SOD3P08294 240 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 PTHLHP12272 177 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 HIST1H1DP16402 221 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 PRKACAP17612 351 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 EGR1P18146 543 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 TNFRSF1AP19438 455 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 CHATP28329 748 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 BLVRBP30043 206 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 DGCR2P98153 550 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 ZNF181Q2M3W8 571 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 MPV17LQ2QL34 196 aa12.42□□□□□ -0.42
SHKBP1-211ENST00000595945 CDNFQ49AH0 187 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms