RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	RNASE10	Q5GAN6	216 aa	Known RBP	10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TRAPPC6B	Q86SZ2	158 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	COMMD2	Q86X83	199 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMPRSS13	Q9BYE2	586 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TBL1XR1	Q9BZK7	514 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	COMMD9	Q9P000	198 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SHPK	Q9UHJ6	478 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SLC7A11	Q9UPY5	501 aa		10.2	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063		A0A1B0GV72	72 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063		A0A1W2PP11	408 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	MPTX1	A8MV57	137 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	AGPAT2	O15120	278 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CNIH1	O95406	144 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CER1	O95813	267 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ARG1	P05089	322 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	H2AFB1	P0C5Y9	115 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	HRH1	P35367	487 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	IL13RA1	P78552	427 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	IKZF1	Q13422	519 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CDCP2	Q5VXM1	449 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	LCN10	Q6JVE6	187 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	COX15	Q7KZN9	410 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	FAM58A	Q8N1B3	248 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	NAT6	Q93015	286 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	NICN1	Q9BSH3	213 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SELENOI	Q9C0D9	397 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	BCO1	Q9HAY6	547 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	IGKV3D-11	A0A0A0MRZ8	115 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PRSS37	A4D1T9	235 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ITGB2	P05107	769 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SNRPC	P09234	159 aa	Known RBP	10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	FBXW4	P57775	412 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TAS2R19	P59542	299 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	RAET1L	Q5VY80	246 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	LEMD1	Q68G75	181 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ABLIM2	Q6H8Q1	611 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	OR8G2P	Q6IF36	304 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SLC18B1	Q6NT16	456 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMEM144	Q7Z5S9	345 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ZNF584	Q8IVC4	421 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	OR52N4	Q8NGI2	321 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	NPRL2	Q8WTW4	380 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SLC46A1	Q96NT5	459 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TRIB1	Q96RU8	372 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	WWTR1	Q9GZV5	400 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PARP12	Q9H0J9	701 aa	Known RBP	10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	BANF2	Q9H503	90 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CKLF	Q9UBR5	152 aa		10.19	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMED7-TICAM2	A0A0A6YYA0	188 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TRBV7-9	A0A0J9YWB2	115 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMEM269	A0A1B0GVZ9	245 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	FRG2C	A6NGY1	282 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CD1A	P06126	327 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CD96	P40200	585 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PRKX	P51817	358 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PRSS12	P56730	875 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	LSM6	P62312	80 aa	Known RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ARF6	P62330	175 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CSNK2A1	P68400	391 aa	Predicted RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ARSJ	Q5FYB0	599 aa	Predicted RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	BTNL3	Q6UXE8	466 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CSNK2A3	Q8NEV1	391 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	OR9K2	Q8NGE7	335 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	OR13C9	Q8NGT0	318 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	OR6K3	Q8NGY3	331 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	WFIKKN1	Q96NZ8	548 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TAS2R8	Q9NYW2	309 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ERRFI1	Q9UJM3	462 aa	Predicted RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	RNF222	A6NCQ9	220 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063		A6NIZ1	184 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CDRT15L2	A8MXV6	281 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	DISC1	C4P0D8	188 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ADAM10	O14672	748 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CD2	P06729	351 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	UBC	P0CG48	685 aa	Known RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PGAM2	P15259	253 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	AREG	P15514	252 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	RAB6A	P20340	208 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	CEACAM6	P40199	344 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	IDH3G	P51553	393 aa	Predicted RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	DCD	P81605	110 aa	Known RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	PDCD1	Q15116	288 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	GLT8D1	Q68CQ7	371 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SLC26A10	Q8NG04	563 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	MARCH1	Q8TCQ1	289 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMED6	Q8WW62	240 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TSNAX	Q99598	290 aa	Known RBP	10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	FAM96B	Q9Y3D0	163 aa		10.18	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	IFI6	P09912	130 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SP9	P0CG40	484 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	AKR1C3	P42330	323 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ATP5I	P56385	69 aa	Predicted RBP	10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	ELAVL1	Q15717	326 aa	Known RBP	10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	RHBDD2	Q6NTF9	364 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	C11orf87	Q6NUJ2	197 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SLC29A4	Q7RTT9	530 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	TMEM116	Q8NCL8	245 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	C14orf79	Q96F83	325 aa		10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	SRSF8	Q9BRL6	282 aa	Known RBP	10.17	□□□□□ -0.78
CDK5RAP3-231	ENST00000584063	NKX6-2	Q9C056	277 aa	Predicted RBP	10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms